I'm not sure what's going on. If you tar and gzip one of the subject directories we'll see if we can replicate and fix it Bruce

On Tue, 19 Jul 2016, Uquillas, Federico D'Oleire wrote:

Hi Bruce,

Thank you for the quick reply. Please see below:

Volume information for brainmask.mgz type: MGH dimensions: 256 x 256 x 256 voxel sizes: 1.0000, 1.0000, 1.0000 type: UCHAR (0) fov: 256.000 dof: 0 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 1000.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 3.0000 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = -7.1890 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -24.8186

talairach xfm : /autofs/cluster/sperling/Centiloid_New/50-70_Data/FreeSurferProc/AD01/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal

voxel to ras transform: -1.0000 0.0000 0.0000 131.0000 0.0000 0.0000 1.0000 -135.1890 0.0000 -1.0000 0.0000 103.1814 0.0000 0.0000 0.0000 1.0000

voxel-to-ras determinant -1

ras to voxel transform: -1.0000 0.0000 0.0000 131.0000 -0.0000 -0.0000 -1.0000 103.1814 -0.0000 1.0000 -0.0000 135.1890 0.0000 0.0000 0.0000 1.0000

Volume information for aseg.presurf.mgz type: MGH dimensions: 256 x 256 x 256 voxel sizes: 1.0000, 1.0000, 1.0000 type: INT (1) fov: 256.000 dof: 0 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 1000.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 3.0000 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = -7.1890 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -24.8186

talairach xfm : /autofs/cluster/sperling/Centiloid_New/50-70_Data/FreeSurferProc/AD01/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal

voxel to ras transform: -1.0000 0.0000 0.0000 131.0000 0.0000 0.0000 1.0000 -135.1890 0.0000 -1.0000 0.0000 103.1814 0.0000 0.0000 0.0000 1.0000

voxel-to-ras determinant -1

ras to voxel transform: -1.0000 0.0000 0.0000 131.0000 -0.0000 -0.0000 -1.0000 103.1814 -0.0000 1.0000 -0.0000 135.1890 0.0000 0.0000 0.0000 1.0000

Volume information for norm.mgz type: MGH dimensions: 256 x 256 x 256 voxel sizes: 1.0000, 1.0000, 1.0000 type: UCHAR (0) fov: 256.000 dof: 0 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 1000.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 3.0000 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = -7.1890 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -24.8186

talairach xfm : /autofs/cluster/sperling/Centiloid_New/50-70_Data/FreeSurferProc/AD01/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal

voxel to ras transform: -1.0000 0.0000 0.0000 131.0000 0.0000 0.0000 1.0000 -135.1890 0.0000 -1.0000 0.0000 103.1814 0.0000 0.0000 0.0000 1.0000

voxel-to-ras determinant -1

ras to voxel transform: -1.0000 0.0000 0.0000 131.0000 -0.0000 -0.0000 -1.0000 103.1814 -0.0000 1.0000 -0.0000 135.1890 0.0000 0.0000 0.0000 1.0000

Best,

Fred

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From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fischl@nmr.mgh.harvard.edu] Sent: Tuesday, July 19, 2016 2:09 PM To: Freesurfer support list Subject: Re: [Freesurfer] mriBuildVoronoiDiagramFloat - argument out of domain

hmmm, no, that's odd. Did you do anything outside of FS on any of the volumes? Try running mri_info on aseg.presurf.mgz, brainmask.mgz and norm.mgz and send us the output

cheers Bruce

On Tue, 19 Jul 2016, Uquillas, Federico D'Oleire wrote:

...

Dear fellow Freesurfer users,

I have 4 jobs that have failed with the following after submitting -recon–all –autorecon2 –autorecon3 for skullstip edits, and control points:

mriBuildVoronoiDiagramFloat Incorrect input type(s): Numerical argument out of domain.

Wondering what this means? I’m attaching one of these log files as all 4 exited with the same.

Thank you for any input you may be able to provide.

Best,

Fred

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