Hi Bruce,
Thank you for the quick reply. Please see below:
Volume information for brainmask.mgz type: MGH dimensions: 256 x 256 x 256 voxel sizes: 1.0000, 1.0000, 1.0000 type: UCHAR (0) fov: 256.000 dof: 0 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 1000.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 3.0000 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = -7.1890 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -24.8186
talairach xfm : /autofs/cluster/sperling/Centiloid_New/50-70_Data/FreeSurferProc/AD01/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal
voxel to ras transform: -1.0000 0.0000 0.0000 131.0000 0.0000 0.0000 1.0000 -135.1890 0.0000 -1.0000 0.0000 103.1814 0.0000 0.0000 0.0000 1.0000
voxel-to-ras determinant -1
ras to voxel transform: -1.0000 0.0000 0.0000 131.0000 -0.0000 -0.0000 -1.0000 103.1814 -0.0000 1.0000 -0.0000 135.1890 0.0000 0.0000 0.0000 1.0000
Volume information for aseg.presurf.mgz type: MGH dimensions: 256 x 256 x 256 voxel sizes: 1.0000, 1.0000, 1.0000 type: INT (1) fov: 256.000 dof: 0 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 1000.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 3.0000 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = -7.1890 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -24.8186
talairach xfm : /autofs/cluster/sperling/Centiloid_New/50-70_Data/FreeSurferProc/AD01/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal
voxel to ras transform: -1.0000 0.0000 0.0000 131.0000 0.0000 0.0000 1.0000 -135.1890 0.0000 -1.0000 0.0000 103.1814 0.0000 0.0000 0.0000 1.0000
voxel-to-ras determinant -1
ras to voxel transform: -1.0000 0.0000 0.0000 131.0000 -0.0000 -0.0000 -1.0000 103.1814 -0.0000 1.0000 -0.0000 135.1890 0.0000 0.0000 0.0000 1.0000
Volume information for norm.mgz type: MGH dimensions: 256 x 256 x 256 voxel sizes: 1.0000, 1.0000, 1.0000 type: UCHAR (0) fov: 256.000 dof: 0 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 1000.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = 3.0000 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = -7.1890 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = -24.8186
talairach xfm : /autofs/cluster/sperling/Centiloid_New/50-70_Data/FreeSurferProc/AD01/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal
voxel to ras transform: -1.0000 0.0000 0.0000 131.0000 0.0000 0.0000 1.0000 -135.1890 0.0000 -1.0000 0.0000 103.1814 0.0000 0.0000 0.0000 1.0000
voxel-to-ras determinant -1
ras to voxel transform: -1.0000 0.0000 0.0000 131.0000 -0.0000 -0.0000 -1.0000 103.1814 -0.0000 1.0000 -0.0000 135.1890 0.0000 0.0000 0.0000 1.0000
Best,
Fred
________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fischl@nmr.mgh.harvard.edu] Sent: Tuesday, July 19, 2016 2:09 PM To: Freesurfer support list Subject: Re: [Freesurfer] mriBuildVoronoiDiagramFloat - argument out of domain
hmmm, no, that's odd. Did you do anything outside of FS on any of the volumes? Try running mri_info on aseg.presurf.mgz, brainmask.mgz and norm.mgz and send us the output
cheers Bruce
On Tue, 19 Jul 2016, Uquillas, Federico D'Oleire wrote:
Dear fellow Freesurfer users,
I have 4 jobs that have failed with the following after submitting -recon–all –autorecon2 –autorecon3 for skullstip edits, and control points:
mriBuildVoronoiDiagramFloat Incorrect input type(s): Numerical argument out of domain.
Wondering what this means? I’m attaching one of these log files as all 4 exited with the same.
Thank you for any input you may be able to provide.
Best,
Fred