External Email - Use Caution
Dear experts,
I was running mri2mesh command and I got this error:
mris_convert /Users/davidemomi/Desktop/DAVE/sim_fem/fs_subj60/surf/rh.white /Users/davidemomi/Desktop/DAVE/sim_fem/m2m_subj60/tmp/wm.rh.stl dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
So I've tried to source Freesurfer and run
sudo -E fs_update
But I got another error
rsync -zbrlv --progress --suffix=.1531384527_bak rsync:// surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c/* /Applications/freesurfer
rsync: failed to connect to surfer.nmr.mgh.harvard.edu: Operation timed out (60)
rsync error: error in socket IO (code 10) at /BuildRoot/Library/Caches/com.apple.xbs/Sources/rsync/rsync-52/rsync/clientserver.c(106) [receiver=2.6.9]
Could you please help me with both errors?
Thanks in advance
Davide
Hello David,
Please try downloading the following archive, unzip it, and follow the instructions in the README to update the files that have the lazy symbol issue.
https://drive.google.com/open?id=1w0vZyWTY0HrbcDiP1jWsmGl_GMUSh7tR
-rob
On Jul 12, 2018, at 4:48 AM, Davide Momi <momi.davide89@gmail.commailto:momi.davide89@gmail.com> wrote:
External Email - Use Caution
Dear experts,
I was running mri2mesh command and I got this error:
mris_convert /Users/davidemomi/Desktop/DAVE/sim_fem/fs_subj60/surf/rh.white /Users/davidemomi/Desktop/DAVE/sim_fem/m2m_subj60/tmp/wm.rh.stl dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
So I've tried to source Freesurfer and run
sudo -E fs_update
But I got another error
rsync -zbrlv --progress --suffix=.1531384527_bak rsync://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c/*http://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c/* /Applications/freesurfer rsync: failed to connect to surfer.nmr.mgh.harvard.eduhttp://surfer.nmr.mgh.harvard.edu/: Operation timed out (60) rsync error: error in socket IO (code 10) at /BuildRoot/Library/Caches/com.apple.xbs/Sources/rsync/rsync-52/rsync/clientserver.c(106) [receiver=2.6.9]
Could you please help me with both errors?
Thanks in advance
Davide <mri2mesh_log.html>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hello David,
Please try downloading the following archive, unzip it, and follow the instructions in the README to update the files that have the lazy symbol issue.
https://drive.google.com/open?id=1w0vZyWTY0HrbcDiP1jWsmGl_GMUSh7tR
-rob
On Jul 12, 2018, at 4:48 AM, Davide Momi <momi.davide89@gmail.commailto:momi.davide89@gmail.com> wrote:
External Email - Use Caution
Dear experts,
I was running mri2mesh command and I got this error:
mris_convert /Users/davidemomi/Desktop/DAVE/sim_fem/fs_subj60/surf/rh.white /Users/davidemomi/Desktop/DAVE/sim_fem/m2m_subj60/tmp/wm.rh.stl dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
So I've tried to source Freesurfer and run
sudo -E fs_update
But I got another error
rsync -zbrlv --progress --suffix=.1531384527_bak rsync://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c/*http://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c/* /Applications/freesurfer rsync: failed to connect to surfer.nmr.mgh.harvard.eduhttp://surfer.nmr.mgh.harvard.edu/: Operation timed out (60) rsync error: error in socket IO (code 10) at /BuildRoot/Library/Caches/com.apple.xbs/Sources/rsync/rsync-52/rsync/clientserver.c(106) [receiver=2.6.9]
Could you please help me with both errors?
Thanks in advance
Davide <mri2mesh_log.html>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Dear Robert,
Thanks for both your help and your prompt response
I've followed the instruction and everything seems fine
Thanks again
Davide Momi ----------- PhD Candidate Unit of Behavioral Economics and Neuroeconomics Department of Neuroscience, Imaging and Clinical Sciences University "G. d'Annunzio" of Chieti Via dei Vestini 31, 66013 Chieti, Italy Mobile ++39 - 348-2650293
2018-07-12 16:27 GMT+02:00 Dicamillo, Robert RDICAMILLO@mgh.harvard.edu:
Hello David,
Please try downloading the following archive, unzip it, and follow the instructions in the README to update the files that have the lazy symbol issue.
https://drive.google.com/open?id=1w0vZyWTY0HrbcDiP1jWsmGl_GMUSh7tR
-rob
On Jul 12, 2018, at 4:48 AM, Davide Momi momi.davide89@gmail.com wrote:
External Email - Use CautionDear experts,
I was running mri2mesh command and I got this error:
mris_convert /Users/davidemomi/Desktop/DAVE/sim_fem/fs_subj60/surf/rh.white /Users/davidemomi/Desktop/DAVE/sim_fem/m2m_subj60/tmp/wm.rh.stl dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
So I've tried to source Freesurfer and run
sudo -E fs_update
But I got another error
rsync -zbrlv --progress --suffix=.1531384527_bak rsync://surfer.nmr.mgh. harvard.edu/pub/dist/freesurfer/patches/freesurfer- Darwin-OSX-stable-pub-v6.0.0-2beb96c/* /Applications/freesurfer rsync: failed to connect to surfer.nmr.mgh.harvard.edu: Operation timed out (60) rsync error: error in socket IO (code 10) at /BuildRoot/Library/Caches/com. apple.xbs/Sources/rsync/rsync-52/rsync/clientserver.c(106) [receiver=2.6.9]
Could you please help me with both errors?
Thanks in advance
Davide <mri2mesh_log.html>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu