im running mri_cvs_register --step2, running it in a shell, not in the background. the process returned but top shows mri_aparc2aseg still running at 100% cpu for 1320 minutes.
seems something is not running correctly ?
greg
Hi, i have a problem:
i have a file aseg+aparc.mgz, generated by freesurfer, and i would like to visualize it with trackvis (i mostly need the aparc part). the problem is, that if i just convert it to nifti, it seems to be in a different reference frame.
i tried to read the freesurfer coordinate tutorial, but i couldnt figure out what's the right way to convert a freesurfer mgz into trackvis coordinate space..
does anyone have a clue?
thanks, Paolo
Hi Paolo, I think you'll find this tutorial has what you are looking for: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Diffusion#ResamplingStr... Allison
On Tue, 10 Jan 2012, paolo wrote:
Hi, i have a problem:
i have a file aseg+aparc.mgz, generated by freesurfer, and i would like to visualize it with trackvis (i mostly need the aparc part). the problem is, that if i just convert it to nifti, it seems to be in a different reference frame.
i tried to read the freesurfer coordinate tutorial, but i couldnt figure out what's the right way to convert a freesurfer mgz into trackvis coordinate space..
does anyone have a clue?
thanks, Paolo _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Allison Player -
Gregory Kirk -
paolo