External Email - Use Caution
Dear Developer and Eugenio,
We encounter the error at the end of the analysis,it looks like this:
*Smoothing mesh collection with kernel size 0.750000 .../usr/local/freesurfer/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh: line 40: 499 Killed /usr/local/freesurfer/bin/segmentSubjectT1_autoEstimateAlveusML S013 /data 0.333333333333333333333333333333333333 /usr/local/freesurfer/average/HippoSF/atlas/AtlasMesh.gz /usr/local/freesurfer/average/HippoSF/atlas/AtlasDump.mgz /usr/local/freesurfer/average/HippoSF/atlas/compressionLookupTable.txt 0.05 right L-BFGS v21 '/usr/local/freesurfer/bin/fs_run_from_mcr /usr/local/freesurfer/bin/' 0*
*Linux f8e6a6f8a44a 5.10.25-linuxkit #1 SMP Tue Mar 23 09:27:39 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux*
*T1 hippocampal subfields exited with ERRORS at Thu Jun 10 10:22:54 UTC 2021*
I've attached the log file here, could you help us with this error? Thank you so much!
Best regards,
Josephine
Dear Josephine, This is unusual. Could it be possible that you are running out of RAM memory? Do you have 16GB or more available? Cheers, /Eugenio
On 11 Jun 2021, at 01:39, 林鈺庭 <ytlin923@g.ntu.edu.twmailto:ytlin923@g.ntu.edu.tw> wrote:
External Email - Use Caution
Dear Developer and Eugenio,
We encounter the error at the end of the analysis,it looks like this:
Smoothing mesh collection with kernel size 0.750000 .../usr/local/freesurfer/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh: line 40: 499 Killed /usr/local/freesurfer/bin/segmentSubjectT1_autoEstimateAlveusML S013 /data 0.333333333333333333333333333333333333 /usr/local/freesurfer/average/HippoSF/atlas/AtlasMesh.gz /usr/local/freesurfer/average/HippoSF/atlas/AtlasDump.mgz /usr/local/freesurfer/average/HippoSF/atlas/compressionLookupTable.txt 0.05 right L-BFGS v21 '/usr/local/freesurfer/bin/fs_run_from_mcr /usr/local/freesurfer/bin/' 0 Linux f8e6a6f8a44a 5.10.25-linuxkit #1 SMP Tue Mar 23 09:27:39 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
T1 hippocampal subfields exited with ERRORS at Thu Jun 10 10:22:54 UTC 2021
I've attached the log file here, could you help us with this error? Thank you so much!
Best regards, Josephine <hippocampal-subfields-T1.log>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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