Hi Akram,

Can you copy one of these subjects to: /space/tensor/14/users/jenni/testdir

and I will play with it and see what I can do - I have some scripts that might do something.

Jenni

On Fri, 1 Dec 2006, Akram Bakkour wrote:

Hi, I'm running everything on thigpen.

setenv SUBJECTS_DIR /space/thigpen/8/users/akram/ADNI_processing

I'm having trouble fixing the talairach of these 4 subjects: 005_S_0572 023_S_0030 116_S_0382 126_S_0405

I've tried: mri_convert brainmask.mgz brainmask.mnc mritotal -protocol icbm brainmask.mnc brainmask.xfm cp brainmask.xfm transforms/talairach.xfm

This worked for a few other subjects which had similar talairach problems, but didn't work for these four.

I tried loading them in tkregister2:

tkregister2 --mgz --s $subject --fstal

but the volume won't load.

Any suggestions how to fix these talairachs?

Thanks! Akram. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer