Hi Akram,
Can you copy one of these subjects to: /space/tensor/14/users/jenni/testdir
and I will play with it and see what I can do - I have some scripts that might do something.
Jenni
On Fri, 1 Dec 2006, Akram Bakkour wrote:
Hi, I'm running everything on thigpen.
setenv SUBJECTS_DIR /space/thigpen/8/users/akram/ADNI_processing
I'm having trouble fixing the talairach of these 4 subjects: 005_S_0572 023_S_0030 116_S_0382 126_S_0405
I've tried: mri_convert brainmask.mgz brainmask.mnc mritotal -protocol icbm brainmask.mnc brainmask.xfm cp brainmask.xfm transforms/talairach.xfm
This worked for a few other subjects which had similar talairach problems, but didn't work for these four.
I tried loading them in tkregister2:
tkregister2 --mgz --s $subject --fstal
but the volume won't load.
Any suggestions how to fix these talairachs?
Thanks! Akram. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer