It appears to be an issue with the dev build and should be fixed in tomorrows build.

-Zeke

On 03/02/2016 08:31 AM, Watson, Christopher wrote:

The option should be: --annot aparc.DKTatlas40 ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of marmaduke woodman [marmaduke.woodman@univ-amu.fr] Sent: Wednesday, March 2, 2016 08:27 To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Unknown option DKTatlas40

hi

I'm using the dev version of FreeSurfer on 64-bit Fedora 23.

Recon-all runs fine but at the end I see

$ recon-all -s tvb -aparc2aseg ... mri_aparc2aseg --s tvb --volmask --aseg aseg.presurf.hypos --DKTatlas40

ERROR: Option --DKTatlas40 unknown

Running that command

$ mri_aparc2aseg --s tvb --volmask --aseg aseg.presurf.hypos

without the --DKTatlas40 appears to run correctly.

Is this just an issue with the dev version or have I done something silly?

thanks, Marmaduke

ps bugr output

FREESURFER_HOME: /opt/freesurfer

Build stamp: freesurfer-Linux-centos6_x86_64-dev-20160229

RedHat release: Fedora release 23 (Twenty Three)

Kernel info: Linux 4.3.3-300.fc23.x86_64 x86_64

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer