The option should be: --annot aparc.DKTatlas40 ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of marmaduke woodman [marmaduke.woodman@univ-amu.fr] Sent: Wednesday, March 2, 2016 08:27 To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Unknown option DKTatlas40
hi
I'm using the dev version of FreeSurfer on 64-bit Fedora 23.
Recon-all runs fine but at the end I see
$ recon-all -s tvb -aparc2aseg ... mri_aparc2aseg --s tvb --volmask --aseg aseg.presurf.hypos --DKTatlas40
ERROR: Option --DKTatlas40 unknown
Running that command
$ mri_aparc2aseg --s tvb --volmask --aseg aseg.presurf.hypos
without the --DKTatlas40 appears to run correctly.
Is this just an issue with the dev version or have I done something silly?
thanks, Marmaduke
ps bugr output
FREESURFER_HOME: /opt/freesurfer
Build stamp: freesurfer-Linux-centos6_x86_64-dev-20160229
RedHat release: Fedora release 23 (Twenty Three)
Kernel info: Linux 4.3.3-300.fc23.x86_64 x86_64