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Dear experts,
I'm getting an error running the longitudinal hippocampal/amygdala subfields analysis and hoping for help. I've been able to complete this analysis without problems for all but one of my subjects. The issue is that only the left hemisphere will be processed (but successfully). Cross-sectional hippocampal/amygdala subfield processing works fine, and the quality of the scans and recon-all output looks good. I've tried several times to re-process the data but to no avail. I get the following error message:
... Wrote image to file image_tp_2.mgz This file does not contain MRI parameters Unable to perform assignment because the left and right sides have a different number of elements. Error in SegmentSubfieldsT1Longitudinal (line 2136) MATLAB:matrix:singleSubscriptNumelMismatch
Any ideas on what I might be doing wrong? I couldn't find this specific error in the forums.
Thanks very much, Chris
(running freesurfer-darwin-macOS-7.3.2-20220804-6354275)
The information transmitted is intended only for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, transmission, re-transmission, dissemination or other use of, or taking of any action in reliance upon this information by persons or entities other than the intended recipient is prohibited. If you received this in error, please contact the sender and delete the material from any computer.
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Dear Chris, This is a pretty weird one! Question: what files are there in the temporary directory subjectDir/subjectBase/tmp/hippoSF_T1_long.v22_left/ ? Cheers, /E
-- Juan Eugenio Iglesias http://secure-web.cisco.com/1FmaPIPrt8VADXFs3ezSt_rWHcBh_tWsK4JwiAlnAziRQsMY...
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Hemond, Christopher Christopher.Hemond@umassmemorial.org Date: Wednesday, April 19, 2023 at 18:47 To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Hippocampal/amygdala subfields hemisphere error
External Email - Use Caution Dear experts,
I'm getting an error running the longitudinal hippocampal/amygdala subfields analysis and hoping for help. I've been able to complete this analysis without problems for all but one of my subjects. The issue is that only the left hemisphere will be processed (but successfully). Cross-sectional hippocampal/amygdala subfield processing works fine, and the quality of the scans and recon-all output looks good. I've tried several times to re-process the data but to no avail. I get the following error message:
... Wrote image to file image_tp_2.mgz This file does not contain MRI parameters Unable to perform assignment because the left and right sides have a different number of elements. Error in SegmentSubfieldsT1Longitudinal (line 2136) MATLAB:matrix:singleSubscriptNumelMismatch
Any ideas on what I might be doing wrong? I couldn't find this specific error in the forums.
Thanks very much, Chris
(running freesurfer-darwin-macOS-7.3.2-20220804-6354275)
The information transmitted is intended only for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, transmission, re-transmission, dissemination or other use of, or taking of any action in reliance upon this information by persons or entities other than the intended recipient is prohibited. If you received this in error, please contact the sender and delete the material from any computer.
freesurfer@nmr.mgh.harvard.edu
-
Hemond, Christopher -
Iglesias Gonzalez, Juan E.