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Dear Gwang-Won, What version are you using? What’s the output of “recon-all –version”? Cheers, /Eugenio

-- Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com

From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Gwang-Won Kim kw0212@nate.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Friday, 21 June 2019 at 15:25 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] I have a question for "Segmentation of thalamic nuclei."

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Dear there,

I tried to process “Segmentation of thalamic nuclei” using source the FreeSurfer development version. I filled out “segmentThalamicNuclei.sh bert [SUBJECTS_DIR]”. In two computer, there were massages “segmentThamicNuclei.sh: Command not found” and “bash: segmentThamicNuclei.sh: command not found”, respectively. How do I resolve this problem?

Best, Gwang-Won Kim