What version of FS are you using? If before 6.0 (eg, 5,3), then it may be an error with the initialization. This is much improved in version 6.

On 6/18/2019 5:38 PM, Wenzhen Zhao wrote:

     External Email - Use Caution

Dear list,

After running preproc-sess on fmri data, bbr-sum was 0.94. After looking through images of template.nii.gz with register.dof6.lta file, I found that coronal and axial views of template(w/ registration applied) are switched.

$preproc-sess -s sess01 -fsd rest -surface fsaverage lhrh -mni305 -fwhm 5 -per-run

Is there any possible error that I might have made? or is there any way to fix it?

I appreciate your help!

Thanks, Wenzhen

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer