Hi FS experts, I ran "segmentHA_T1.sh 0010006 $SUBJECTS_DIR" for amydala segmentations. But there is only hippocampal subfields, no amydala segmentation .txt file in mri file. I ran ''recon-all'' in FS 6.0, and copy segmentHA_T1.sh and checkMCR to FREESURFER_HOME. Why there is no files of amydala? I am looking forward to your reply. Thank you very much.
Sincerely, Zheng
Dear Zheng, You need to download the whole dev version, not just the script ;-) Cheers, /E
-- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of 郑凤莲 13181786167@163.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Thursday, 11 January 2018 at 11:20 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Amydala segmentation
Hi FS experts, I ran "segmentHA_T1.sh 0010006 $SUBJECTS_DIR" for amydala segmentations. But there is only hippocampal subfields, no amydala segmentation .txt file in mri file. I ran ''recon-all'' in FS 6.0, and copy segmentHA_T1.sh and checkMCR to FREESURFER_HOME. Why there is no files of amydala? [cid:image001.png@01D38ADD.534E4400] [cid:image002.png@01D38ADD.534E4400] I am looking forward to your reply. Thank you very much.
Sincerely, Zheng
freesurfer@nmr.mgh.harvard.edu
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Iglesias Gonzalez, Eugenio -
郑凤莲