myaparc - Freesurfer

10 Aug 2016


      Dear FS,
I figured out how to list my ctabe-file (attached). Again, the file myaparc was created but this time I got the following error:
Colortable:aparc.annot.ctab
Annotname: myaparc
Nhitsfile nhits.mgh
Nlabels 6
Labeltresh 0  0.00000
Loading freesurfer/fsaverage/surf/lh.orig
1   9345678 fusiform
2  145768794 inferiorparietal
3   79873658 inferiortemporal
(etc)
Mapping unhit to unknown
Found 137851 unhit vertices
Writing annot to freesurfer/fsaverage/lh.myaparc.annot
What goes wrong?
My command line is:
mris_label2annot --subject fsaverage --hemi  lh  --ctab aparc.annot.ctab --annot myaparc  --l lh.fusiform.label
  --l lh.inferiorparietal.label (etc.)  --nhits nhits.mgh
(I have version 5.3)
Thanks for your help,
Caroline
My command line is:
mris_label2annot --subject fsaverage --hemi  lh  --ctab aparc.annot.ctab --annot myaparc  --l lh.fusiform.label
  --l lh.inferiorparietal.label (etc.)  --nhits nhits.mgh
(I have version 5.3)
Regards, Caroline
Message: 3
Date: Wed, 3 Aug 2016 09:30:48 -0400
From: Douglas Greve <greve@nmr.mgh.harvard.edumailto:greve@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] mapping error
To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu
Message-ID: <f3f77469-16ad-6fdf-f647-80aee162dbfc@nmr.mgh.harvard.edumailto:f3f77469-16ad-6fdf-f647-80aee162dbfc@nmr.mgh.harvard.edu>
Content-Type: text/plain; charset="windows-1252"
what is your command line?
On 8/3/16 6:00 AM, Caroline Beelen wrote:
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