HI freesurfer experts! i want to correct for intercranial volume in my qdec analysis. To do that I want to generate a file in which the intracranial volume of each subject is listed. do i have to use the asegstats2tabel command? I tried it and it gave me following error message:
asegstats2table --subjects 1 2 4 5 6 7 8 9 10 11 12 13 14 15 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 41 42 43 45 47 48 --meas volume --tablefile aseg_stats.txt Traceback (most recent call last): File "/Applications/freesurfer/bin/asegstats2table", line 6, in <module> import fsutils ImportError: No module named fsutils [admins-imac:~/Rosa_MRTs] steimke% asegstats2table --subjects 1 2 4 5 6 7 8 9 10 11 12 13 14 15 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 41 42 43 45 47 48 Traceback (most recent call last): File "/Applications/freesurfer/bin/asegstats2table", line 6, in <module> import fsutils ImportError: No module named fsutils
what did i do wrong? is this the right approach to get a ICV file?
thanks in advance!!! Rosa
Rosa Steimke Student Master of Neuroscience Vrije Universiteit Amsterdam Netherlands
I have a Python script to do this. I don't know how to make this using asegatats2table, let's wait if somebody answer, otherwise I'll send you this script.
----------------------------------------------------------- Pedro Paulo de M. Oliveira Junior CIO Latam Netfilter & SpeedComm Telecom --- NewNetfilter 3.0 www.Netfilter.com.br --- Soon Netfilter Small Business
2009/7/14 Rosa Steimke rosasteimke@gmx.de
HI freesurfer experts! i want to correct for intercranial volume in my qdec analysis. To do that I want to generate a file in which the intracranial volume of each subject is listed. do i have to use the asegstats2tabel command? I tried it and it gave me following error message:
asegstats2table --subjects 1 2 4 5 6 7 8 9 10 11 12 13 14 15 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 41 42 43 45 47 48 --meas volume --tablefile aseg_stats.txt Traceback (most recent call last): File "/Applications/freesurfer/bin/asegstats2table", line 6, in <module> import fsutils ImportError: No module named fsutils [admins-imac:~/Rosa_MRTs] steimke% asegstats2table --subjects 1 2 4 5 6 7 8 9 10 11 12 13 14 15 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 41 42 43 45 47 48 Traceback (most recent call last): File "/Applications/freesurfer/bin/asegstats2table", line 6, in <module> import fsutils ImportError: No module named fsutils
what did i do wrong? is this the right approach to get a ICV file?
thanks in advance!!! Rosa
Rosa Steimke Student Master of Neuroscience Vrije Universiteit Amsterdam Netherlands -- Neu: GMX Doppel-FLAT mit Internet-Flatrate + Telefon-Flatrate für nur 19,99 Euro/mtl.!* http://portal.gmx.net/de/go/dsl02 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Rosa
Sorry, this was a bug related to the table producing scripts in a previous version of FreeSurfer which was fixed subsequently. Get the files from
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/krish/asegaparcutils/datastruct_utils.py ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/krish/asegaparcutils/fsutils.py ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/krish/asegaparcutils/misc.py ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/krish/asegaparcutils/subject_info.py
and save them to your $FREESURFER_HOME/bin/ directory. ( In your case it's /Applications/freesurfer/bin/ directory )
Cheers Krish
On Jul 14, 2009, at 9:36 AM, Rosa Steimke wrote:
HI freesurfer experts! i want to correct for intercranial volume in my qdec analysis. To do that I want to generate a file in which the intracranial volume of each subject is listed. do i have to use the asegstats2tabel command? I tried it and it gave me following error message:
asegstats2table --subjects 1 2 4 5 6 7 8 9 10 11 12 13 14 15 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 41 42 43 45 47 48 --meas volume --tablefile aseg_stats.txt Traceback (most recent call last): File "/Applications/freesurfer/bin/asegstats2table", line 6, in
<module> import fsutils ImportError: No module named fsutils [admins-imac:~/Rosa_MRTs] steimke% asegstats2table --subjects 1 2 4 5 6 7 8 9 10 11 12 13 14 15 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 41 42 43 45 47 48 Traceback (most recent call last): File "/Applications/freesurfer/bin/asegstats2table", line 6, in <module> import fsutils ImportError: No module named fsutils
what did i do wrong? is this the right approach to get a ICV file?
thanks in advance!!! Rosa
Rosa Steimke Student Master of Neuroscience Vrije Universiteit Amsterdam Netherlands -- Neu: GMX Doppel-FLAT mit Internet-Flatrate + Telefon-Flatrate für nur 19,99 Euro/mtl.!* http://portal.gmx.net/de/go/dsl02 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Krish Subramaniam -
Pedro Paulo de Magalhães Oliveira Junior -
Rosa Steimke