lh.thickness is not a surface file, it is a surface overlay. Try reading in lh.white as a surface doug

On 03/14/2014 10:34 AM, 조규호 wrote:

Could anyone help me deal with error in integrating Freesurfer with Surfstat ?

Because "MNI object" data was not available not like as written in the web documentation (http://www.math.mcgill.ca/keith/surfstat/), http://www.math.mcgill.ca/keith/surfstat/%29, I used my own patient's MRI data with Freesurfer software.

(CIVET software is also inaccessible to me.)

After Recon-all , I employed the files "lh.thickness and lh.pial "from "surf" folder as input. (As written in "VIEWING DATA" Section in the online document)

I ran the command :

SurfStatReadSurf('/Users/zhau/Dropbox/subj7442103/surf/lh.thickness')

And the error :

*/Unable to read /Users/zhau/Dropbox/subj7442103/surf/lh.thickness, magic = 16777215/*

*/Error in SurfStatReadSurf1 (line 20)/*

*/if nargin<2/*

*/ /*

*/Output argument "surf" (and maybe others) not assigned during call to/*

*/"/Applications/MATLAB_R2013a.app/toolbox/surfstat/SurfStatReadSurf1.m>SurfStatReadSurf1"./*

*/ /*

*/Error in SurfStatReadSurf (line 69)/*

*/[s,ab]=SurfStatReadSurf1(filenames{1,j},ab,numfields1);/*

It seems I do not understand the structure of input file.

How could I solve this?

Thanks in advance.

Kyoo Ho Cho

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