lh.thickness is not a surface file, it is a surface overlay. Try reading in lh.white as a surface doug
On 03/14/2014 10:34 AM, 조규호 wrote:
Could anyone help me deal with error in integrating Freesurfer with Surfstat ?
Because "MNI object" data was not available not like as written in the web documentation (http://www.math.mcgill.ca/keith/surfstat/), http://www.math.mcgill.ca/keith/surfstat/%29, I used my own patient's MRI data with Freesurfer software.
(CIVET software is also inaccessible to me.)
After Recon-all , I employed the files "lh.thickness and lh.pial "from "surf" folder as input. (As written in "VIEWING DATA" Section in the online document)
I ran the command :
SurfStatReadSurf('/Users/zhau/Dropbox/subj7442103/surf/lh.thickness')
And the error :
*/Unable to read /Users/zhau/Dropbox/subj7442103/surf/lh.thickness, magic = 16777215/*
*/Error in SurfStatReadSurf1 (line 20)/*
*/if nargin<2/*
*/ /*
*/Output argument "surf" (and maybe others) not assigned during call to/*
*/"/Applications/MATLAB_R2013a.app/toolbox/surfstat/SurfStatReadSurf1.m>SurfStatReadSurf1"./*
*/ /*
*/Error in SurfStatReadSurf (line 69)/*
*/[s,ab]=SurfStatReadSurf1(filenames{1,j},ab,numfields1);/*
It seems I do not understand the structure of input file.
How could I solve this?
Thanks in advance.
Kyoo Ho Cho
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer