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Hi Rosie,

For cortical thickness, check out *.aparc.*.stats files (e.g, lh.aparc.stats, lh.aparc.a2009s.stats, lh.aparc.DKTatlas.stats). There is more info in the ROI analysis tutorial:

- https://secure-web.cisco.com/15BXH9iwkvAUJ2mnf7udx7SdsKrQQYNrTO61RpUPKdnieLJ... - http://secure-web.cisco.com/11konKzcN75CItWAIgFCWfEXU5fG9rYHy9qXZfPC5tgF0-Kk... - https://secure-web.cisco.com/1xzPihpYli8qjtCXIgus5VJlEXiRWD1ZGJd9d35zuGRR7QV...

-Paul

On Mon, Jun 14, 2021 at 10:09 AM Rosalia Dacosta Aguayo rdacostaa@gmail.com wrote:

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Dear Freesurfer's experts,

I run FreeSurfer and I got the following stats:

rosalia@rosalia-Lenovo-Y520-15IKBN /media/rosalia/Nuevo_vol/ARTICO/derivatives/freesurfer/sub-003/stats $ ls aseg.stats lh.BA_exvivo.thresh.stats rh.aparc.stats lh.aparc.a2009s.stats lh.curv.stats rh.BA_exvivo.stats lh.aparc.DKTatlas.stats lh.w-g.pct.stats rh.BA_exvivo.thresh.stats lh.aparc.pial.stats rh.aparc.a2009s.stats rh.curv.stats lh.aparc.stats rh.aparc.DKTatlas.stats rh.w-g.pct.stats lh.BA_exvivo.stats rh.aparc.pial.stats wmparc.stats rosalia@rosalia-Lenovo-Y520-15IKBN /media/rosalia/Nuevo_vol/ARTICO/derivatives/freesurfer/sub-003/stats $

A part from the aseg.stats file, which one should I consider if I am interested in cortical thickness. Should I run any other step for this?

Best, Rosie

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