External Email - Use Caution
Hi! I am trying to run tracula- TRAC-All and I get this error message, i assumed it is because that bvals and bvecs needed to be predetermined but it seems like that is not the case and i am still getting the same error:
Transform file should be eddy_correct/eddy log file or .mat file
What do you think the problem is?
Thanks so much for your help.
Hi Samar - Can you please attach your trac-all.log file and your configuration file? It's hard to guess what's going on just from the line where the error occurs without seeing everything that came before it.
Thanks! Anastasia. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Samar Fouda samarsfouda@gmail.com Sent: Friday, October 16, 2020 10:00 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Help!
External Email - Use Caution
Hi! I am trying to run tracula- TRAC-All and I get this error message, i assumed it is because that bvals and bvecs needed to be predetermined but it seems like that is not the case and i am still getting the same error:
Transform file should be eddy_correct/eddy log file or .mat file
What do you think the problem is?
Thanks so much for your help. --
--
Samar Fouda
Post Doctoral Associate
Emerge Research Program
National Center for PTSD, Clinical Neuroscience Division
Yale School of Medicine
Samar.fouda@yale.edumailto:Samar.fouda@yale.edu
+1203285-7568
External Email - Use Caution
Hi Anastasia,
Thank you so much for responding, please find the log attached!
On Fri, Oct 16, 2020 at 3:24 PM Yendiki, Anastasia AYENDIKI@mgh.harvard.edu wrote:
Hi Samar - Can you please attach your trac-all.log file and your configuration file? It's hard to guess what's going on just from the line where the error occurs without seeing everything that came before it.
Thanks! Anastasia.
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Samar Fouda < samarsfouda@gmail.com> *Sent:* Friday, October 16, 2020 10:00 AM *To:* freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] Help!
External Email - Use CautionHi! I am trying to run tracula- TRAC-All and I get this error message, i assumed it is because that bvals and bvecs needed to be predetermined but it seems like that is not the case and i am still getting the same error:
Transform file should be eddy_correct/eddy log file or .mat file
What do you think the problem is?
Thanks so much for your help.
*--*
*Samar Fouda*
*Post Doctoral Associate*
*Emerge Research Program*
*National Center for PTSD, Clinical Neuroscience Division*
*Yale School of Medicine*
*Samar.fouda@yale.edu Samar.fouda@yale.edu*
*+1203285-7568* _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
What version of FSL are you using? It seems to be an incompatibility between the version of FSL and version of python that you have: https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=fsl;73e3d6df.1604 ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Samar Fouda samarsfouda@gmail.com Sent: Friday, October 16, 2020 6:04 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Help!
External Email - Use Caution
Hi Anastasia,
Thank you so much for responding, please find the log attached!
On Fri, Oct 16, 2020 at 3:24 PM Yendiki, Anastasia <AYENDIKI@mgh.harvard.edumailto:AYENDIKI@mgh.harvard.edu> wrote: Hi Samar - Can you please attach your trac-all.log file and your configuration file? It's hard to guess what's going on just from the line where the error occurs without seeing everything that came before it.
Thanks! Anastasia. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Samar Fouda <samarsfouda@gmail.commailto:samarsfouda@gmail.com> Sent: Friday, October 16, 2020 10:00 AM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Help!
External Email - Use Caution
Hi! I am trying to run tracula- TRAC-All and I get this error message, i assumed it is because that bvals and bvecs needed to be predetermined but it seems like that is not the case and i am still getting the same error:
Transform file should be eddy_correct/eddy log file or .mat file
What do you think the problem is?
Thanks so much for your help. --
--
Samar Fouda
Post Doctoral Associate
Emerge Research Program
National Center for PTSD, Clinical Neuroscience Division
Yale School of Medicine
Samar.fouda@yale.edumailto:Samar.fouda@yale.edu
+1203285-7568
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
--
Samar Fouda
Post Doctoral Associate
Emerge Research Program
National Center for PTSD, Clinical Neuroscience Division
Yale School of Medicine
Samar.fouda@yale.edumailto:Samar.fouda@yale.edu
+1203285-7568
freesurfer@nmr.mgh.harvard.edu
-
Samar Fouda -
Yendiki, Anastasia