The recon-all.log was in the included files of the mail. I resent it for you
2010/4/26 Bruce Fischl fischl@nmr.mgh.harvard.edu
and the recon-all.log? Also, can you post these to the list so others can help?
On Mon, 26 Apr 2010, De La Llave Teddy wrote:
Hi Bruce,
here is the output of bugr:
Cut-and-paste the following info into your FreeSurfer problem report:
FREESURFER_HOME: /usr/local/freesurfer
Build stamp: freesurfer-Linux-centos4-stable-pub-v4.5.0
Debian version: 5.0
Kernel info: Linux 2.6.28-18-genric i686
Additional information
subject name: test
the entire command-line executed: recon-all -s test -i /usr/local/freesurfer/subjects/ELMA0016.img
-autorecon-all
- the error message generated:
Segmentation fault ERROR: mri_ca_register with non-zero status 139 but continuing despite the error #----------------------------------------- #@# CA Reg Inv Mon Apr 26 06:17:14 CEST 2010 /usr/local/freesurfer/subjects/test/mri
mri_ca_register -invert-and-save transforms/talairach.m3z
Loading, Inverting, Saving, Exiting ... Reading transforms/talairach.m3z ERROR: cannot find or read transforms/talairach.m3z ERROR: mri_ca_register with non-zero status 0 Linux freesurfer-virtual 2.6.28-18-generic #60-Ubuntu SMP Fri Mar 12 04:40:52 UTC 2010 i686 GNU/Linux
recon-all exited with ERRORS at Mon Apr 26 06:17:15 CEST 2010
Please find the recon-all.log included in this mail.
cheers, Teddy
2010/4/26 Bruce Fischl fischl@nmr.mgh.harvard.edu
Hi Teddy,
we need more info than this. Can you send us the recon-all.log and the output of bugr.
cheers Bruce
On Mon, 26 Apr 2010, De La Llave Teddy wrote:
Hi all,
I am running recon-all as follows:
recon-all -subjid subjectTest -all
and get this error:
Segmentation fault ERROR: mri_ca_register with non-zero status 139
I can't continue the rest of the process because the file talairach.m3z not exist.
I saw that others have the same problem but there are no solutions?
freesurfer runs on the virtualbox available in the website. It run with 1,4Go of RAM.
Thanks for your help,
Teddy
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu