The recon-all.log was in the included files of the mail. I resent it for you

2010/4/26 Bruce Fischl fischl@nmr.mgh.harvard.edu

and the recon-all.log? Also, can you post these to the list so others can help?

On Mon, 26 Apr 2010, De La Llave Teddy wrote:

Hi Bruce,

...

here is the output of bugr:

Cut-and-paste the following info into your FreeSurfer problem report:

FREESURFER_HOME: /usr/local/freesurfer

Build stamp: freesurfer-Linux-centos4-stable-pub-v4.5.0

Debian version: 5.0

Kernel info: Linux 2.6.28-18-genric i686

---

Additional information

1. subject name: test

2. the entire command-line executed: recon-all -s test -i /usr/local/freesurfer/subjects/ELMA0016.img

-autorecon-all

3. the error message generated:

Segmentation fault ERROR: mri_ca_register with non-zero status 139 but continuing despite the error #----------------------------------------- #@# CA Reg Inv Mon Apr 26 06:17:14 CEST 2010 /usr/local/freesurfer/subjects/test/mri

mri_ca_register -invert-and-save transforms/talairach.m3z

Loading, Inverting, Saving, Exiting ... Reading transforms/talairach.m3z ERROR: cannot find or read transforms/talairach.m3z ERROR: mri_ca_register with non-zero status 0 Linux freesurfer-virtual 2.6.28-18-generic #60-Ubuntu SMP Fri Mar 12 04:40:52 UTC 2010 i686 GNU/Linux

recon-all exited with ERRORS at Mon Apr 26 06:17:15 CEST 2010

Please find the recon-all.log included in this mail.

cheers, Teddy

2010/4/26 Bruce Fischl fischl@nmr.mgh.harvard.edu

Hi Teddy,

...

we need more info than this. Can you send us the recon-all.log and the output of bugr.

cheers Bruce

On Mon, 26 Apr 2010, De La Llave Teddy wrote:

Hi all,

...

I am running recon-all as follows:

recon-all -subjid subjectTest -all

and get this error:

Segmentation fault ERROR: mri_ca_register with non-zero status 139

I can't continue the rest of the process because the file talairach.m3z not exist.

I saw that others have the same problem but there are no solutions?

freesurfer runs on the virtualbox available in the website. It run with 1,4Go of RAM.

Thanks for your help,

Teddy

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