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Hi Experts,
My tracula completed with no error. So I was trying to view the fa.nii with the following command: freeview -v mri/brain.mgz mri/orig.mgz mri/wmparc.mgz:colormap=lut:opacity=0.2 dmri/dtifit_FA.nii:reg=touch/rusage.mri_ca_register.dat:colormap=heat:heatscale=.2,.2,1 -colorscale -viewport coronal.
It returned with an error message saying: "reading registration failed". I have looked at the register.dat from the following link: RegisterDat - Free Surfer Wiki (harvard.edu) https://secure-web.cisco.com/1hv0bANzHoBn4ULec2TL4BHOCLGLVTqseZKeSEib8vKA0kE2nXx6LC3BRFsvRvIKI0dhVUakxF-YAMS8FjNZIsY6wh_899oPBU_9_qDaIxZOqRT3qin55c6hmFvtTu61UPkFq2pn1v3-d7MTcvMkUUM1TIlpEJyyHjaL-ngn0Y4HO9BEbTAf-gDtwrrFy5fOImaW041pNynTKDrKR7-oGdz9WsoIDNC9StFEbRiDwuQFHpuqbogp1sWAp-ui2ZBn5hhZZW3pJ3hnw4FWDXNaCQm40qUV0Xr23vfRM17fv1DPW-HSZn2Vceo6naKUPQxsD/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FRegisterDat. My register.dat is nothing like that (attached below). So where should the file locate?
Best, Jackie
External Email - Use Caution
Sorry for the trouble, I seemed to find the registration matrix located in xfms/anatorig2diff.bbr.dat. Is that one correct?
Best, Jackie
On Mon, Nov 22, 2021 at 12:36 PM Zeng, Qi qi.zeng@icahn.mssm.edu wrote:
Hi Experts,
My tracula completed with no error. So I was trying to view the fa.nii with the following command: freeview -v mri/brain.mgz mri/orig.mgz mri/wmparc.mgz:colormap=lut:opacity=0.2 dmri/dtifit_FA.nii:reg=touch/rusage.mri_ca_register.dat:colormap=heat:heatscale=.2,.2,1 -colorscale -viewport coronal.
It returned with an error message saying: "reading registration failed". I have looked at the register.dat from the following link: RegisterDat - Free Surfer Wiki (harvard.edu) https://secure-web.cisco.com/1lq63fsRRr9_zp2-PjLm-4XE_tgI707ZrZ0h6aNNJxE32zm70v33X7HR2P6mUpPYNhDLq_OqGUFN0G3I62daXUX3T4AMW7dKWJfaXfmWgQ85VJ1cE-sxz1JsnMLSuLxqt3sVst-tuu4IkX86REI72fghEKSxzyLiP-xAN2djRAHxTjrQyl_4GYHFEUvh7Zo1pM75IRxQ_QvS8RbAL5ypgqK9X6hLXVZx66xOf1T16pFtqtwAEJmtWkUNhlxN5QMLv06Kj1RsVcoTSD_VdXsC1jA9_fcsZSGB_Az23CpkF-Mz-pTZ-yfoaZGX1WaQgsmIaiv6CQGEbWiQE86RICJd93Q/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FRegisterDat. My register.dat is nothing like that (attached below). So where should the file locate?
Best, Jackie
Yes, but if there is an anat2orig2diff.bbr.lta file, use that instead
On 11/22/2021 12:48 PM, Zeng, Qi wrote:
External Email - Use Caution
Sorry for the trouble, I seemed to find the registration matrix located in xfms/anatorig2diff.bbr.dat. Is that one correct?
Best, Jackie
On Mon, Nov 22, 2021 at 12:36 PM Zeng, Qi qi.zeng@icahn.mssm.edu wrote:
Hi Experts, My tracula completed with no error. So I was trying to view the fa.nii with the following command: freeview -v mri/brain.mgz mri/orig.mgz mri/wmparc.mgz:colormap=lut:opacity=0.2 dmri/dtifit_FA.nii:reg=touch/rusage.mri_ca_register.dat:colormap=heat:heatscale=.2,.2,1 -colorscale -viewport coronal. It returned with an error message saying: "reading registration failed". I have looked at the register.dat from the following link: RegisterDat - Free Surfer Wiki (harvard.edu) <https://secure-web.cisco.com/1lq63fsRRr9_zp2-PjLm-4XE_tgI707ZrZ0h6aNNJxE32zm70v33X7HR2P6mUpPYNhDLq_OqGUFN0G3I62daXUX3T4AMW7dKWJfaXfmWgQ85VJ1cE-sxz1JsnMLSuLxqt3sVst-tuu4IkX86REI72fghEKSxzyLiP-xAN2djRAHxTjrQyl_4GYHFEUvh7Zo1pM75IRxQ_QvS8RbAL5ypgqK9X6hLXVZx66xOf1T16pFtqtwAEJmtWkUNhlxN5QMLv06Kj1RsVcoTSD_VdXsC1jA9_fcsZSGB_Az23CpkF-Mz-pTZ-yfoaZGX1WaQgsmIaiv6CQGEbWiQE86RICJd93Q/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FRegisterDat>. My register.dat is nothing like that (attached below). So where should the file locate? Best, Jackie--
Ph.D. candidate Icahn School of Medicine at Mount Sinai
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Douglas N. Greve -
Zeng, Qi