External Email - Use Caution

Dear both,

many thanks for your replies. I will try both options and see what happens.

Best, Vânia de Aguiar, PhD Assistant Professor in Neurolinguistics University of Groningen Faculty of Arts

Oude Kijk in 't Jatstraat 26 Room 1315.0408 9712 EK, Groningen The Netherlands

On Thu, Oct 3, 2019 at 5:49 PM Paul Wighton paul@corticometrics.com wrote:

    External Email - Use Caution

Hi Vânia,

You can use this repository to convert some FreeSurfer outputs to dicom. https://github.com/corticometrics/fs2dicom

Unfortunately, the aparc+aseg is not supported at this time, only the aseg.mgz.

-Paul

On Thu, Oct 3, 2019 at 9:57 AM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:

...

Hi Vânia

you can convert the aparc+aseg.mgz to nifti and find something that goes from there to dicom, but we don't at the moment support writing dicom, although I think Paul (ccd) has worked on it and might have something to add

cheers Bruce

On Thu, 3 Oct 2019, Correia de Aguiar, V.M. wrote:

...

    External Email - Use Caution

Dear Freesurfer developers,

Is it possible to export the ROI segmentations that are stored in ?h.aparc.a2009s.annot or ?h.aparc.annot files into the header of the DICOM file? I would like to open those files with corresponding segmentations in RayStation.

Many thanks for your time. Regards,

Vânia de Aguiar, PhD Assistant Professor in Neurolinguistics University of Groningen Faculty of Arts

Oude Kijk in 't Jatstraat 26 Room 1315.0408 9712 EK, Groningen The Netherlands

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer