hmmm, that suggests that the aseg failed badly. What does it look like?

cheers Bruce On Fri, 3 Jun 2016, Jaiashre Sridhar wrote:

Bruce,

The lh.inflated.nofix shows the brainstem and cerebellum are attached to the cortical surface. Also, the ventricles are not filled in the filled.mgz. Could you please tell me how to fix this manually?

Thanks, Jaiashre.