Hi Gallen, segmentHA_T1_long.sh is only available in the freesurfer dev version. Also, if you’re getting the glibc license error while using the martinos freesurfer distribution, I will message you directly to sort this out.

best, Andrew

On Dec 22, 2017, at 3:11 PM, Gong, Liang <LGONG2@mgh.harvard.edumailto:LGONG2@mgh.harvard.edu> wrote:

Hi,

I just completed a longitudinal stream preprocessing job using Freesurfer5.3, and I want to further analysis on hippocampal subfields. I see the manual in the following link:

https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmy... .buthttps://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala%20.but I can’t find the command of “segmentHA_T1_long.sh”. And then, I change my freesurfer to 6.0, this command also don’t exist.

I also try to using “longHippoSubfieldsT1.sh” to do my job, but there is an error when running: ERROR: Systems running GNU glibc version greater than 2.15 require a newly formatted license file.

PS：I did my freesurfer job on martinos center, the path is /usr/local/freesurfer/stable6/bin/freesurfer

Thanks a lot.

Gallen

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