Hi, after the segmentation process, we obtain a lots of file that I can't understand what they represent. Infact I know the mean of the file aseg.mgz (that is a mask of the segmentation) and norm.mgz but for example I can't understand the difference between brainmask.mgz and brainmask_auto.mgz. Can you help me with a list of the output? And can I obtain the volume rendering of only one part of the segmented structure? (es. Hippocampal)??
Thanks for your help
Leonardo
freesurfer@nmr.mgh.harvard.edu