Hi Guang,

why are you trying to avoid the nu intensity correction? I guess you could copy orig.mgz to nu.mgz and see if that works. We will still need to run our intensity correction (mri_normalize) otherwise the segmentation will fail.

cheers Bruce On Fri, 11 Jun 2010, Guang Zeng wrote:

Hi, there,

I wan to use the -nonuintensitycor option of the recon-all command, my command line is:

recon-all -s subjid -all -nonuintensitycor,

But the process failed because in the following step, they can not find nu.mgz, so I need to create my own nu.mgz before running my recon-all command, is it correct?

Thanks! Guang

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