Good night,
I would like some help to extract mri_anatomical_stats with lobeStrict annot for multiple subjects in a table format, with the results for all subjects there. I've already tried aparcstats2table and I don't got how to insert the lobeStrict annot there.
Thank you very much, Fernanda Moraes
If you look in the recon-all.log file, you will find the call to mris_anatomical stats used to generate the aparc.stats files. Just modify it select your annotation and output stats file name
On 4/13/18 4:26 PM, Fernanda Hansen P. de Moraes wrote:
Good night,
I would like some help to extract mri_anatomical_stats with lobeStrict annot for multiple subjects in a table format, with the results for all subjects there. I've already tried aparcstats2table and I don't got how to insert the lobeStrict annot there.
Thank you very much, Fernanda Moraes
-- Fernanda Hansen P. de Moraes Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Douglas,
I'm already extracting the data with mris_anatomical_stats -a SUBJ225/label/lh.lobesStrict.annot -b SUBJ225 lh But I would like to do it now for multiple subjects at once, as the data extraction. Righ now I'm just copying it to a table, one by one.
Thank you!
On Fri, Apr 13, 2018 at 8:17 PM Douglas Greve dgreve@mgh.harvard.edu wrote:
If you look in the recon-all.log file, you will find the call to mris_anatomical stats used to generate the aparc.stats files. Just modify it select your annotation and output stats file name
On 4/13/18 4:26 PM, Fernanda Hansen P. de Moraes wrote:
Good night,
I would like some help to extract mri_anatomical_stats with lobeStrict annot for multiple subjects in a table format, with the results for all subjects there. I've already tried aparcstats2table and I don't got how to insert the lobeStrict annot there.
Thank you very much, Fernanda Moraes
-- Fernanda Hansen P. de Moraes Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Run it for each subject using -f subject/stats/lh.lobesStrict.stats, then use aparcstats2table with -p lobesStrict to get a summary across all subjects
On 4/16/18 7:18 AM, Fernanda Hansen P. de Moraes wrote:
Douglas,
I'm already extracting the data with mris_anatomical_stats -a SUBJ225/label/lh.lobesStrict.annot -b SUBJ225 lh But I would like to do it now for multiple subjects at once, as the data extraction. Righ now I'm just copying it to a table, one by one.
Thank you!
On Fri, Apr 13, 2018 at 8:17 PM Douglas Greve <dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu> wrote:
If you look in the recon-all.log file, you will find the call to mris_anatomical stats used to generate the aparc.stats files. Just modify it select your annotation and output stats file name On 4/13/18 4:26 PM, Fernanda Hansen P. de Moraes wrote:Good night, I would like some help to extract mri_anatomical_stats with lobeStrict annot for multiple subjects in a table format, with the results for all subjects there. I've already tried aparcstats2table and I don't got how to insert the lobeStrict annot there. Thank you very much, Fernanda Moraes -- Fernanda Hansen P. de Moraes Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.-- Fernanda Hansen P. de Moraes Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Douglas Greve -
Fernanda Hansen P. de Moraes