veronica,

can you email me the commandline and input data for the mri_path2label command being run? i'm unable to access the files in the path in the email.

n.

On Tue, 2012-05-01 at 14:32 -0400, veronica misc wrote:

Hi all,

I've been getting a segmentation fault and was hoping someone could help/advise.

I have been running recon-all -s [subject] -localGI, and eventually I get an segmentation fault (log below). The error occurs with all subjects, running on numerous machines. I remember I was able to run the same command a few months ago with success. The seg fault seems to happen during mri_path2label, and it doesn't crash right away but gets pretty far along first. I am running Freesurfer 'stable5' on Martinos. I tried with 'stable' and got the same error.

Thanks! Veronica

Filling 1176 nlabel 10560 Saving label file /autofs/cluster/purdonlab/users/vsw/archive/intracranial-induction/freesurfer-output/mg43/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001301.label LabelWrite: saving to /autofs/cluster/purdonlab/users/vsw/archive/intracranial-induction/freesurfer-output/mg43/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001301.label Connecting and filling vertices in path at fillseed 160894 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Segmentation fault (core dumped) ERROR: mri_path2label --confillxfn rh.pial /autofs/cluster/purdonlab/users/vsw/archive/intracranial-induction/freesurfer-output/mg43/surf/tmp-mris_compute_lgi-rh.pial/mri_path2label.input failed!

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