Hi all,
I've been getting a segmentation fault and was hoping someone could help/advise.
I have been running recon-all -s [subject] -localGI, and eventually I get an segmentation fault (log below). The error occurs with all subjects, running on numerous machines. I remember I was able to run the same command a few months ago with success. The seg fault seems to happen during mri_path2label, and it doesn't crash right away but gets pretty far along first. I am running Freesurfer 'stable5' on Martinos. I tried with 'stable' and got the same error.
Thanks! Veronica
Filling 1176 nlabel 10560 Saving label file /autofs/cluster/purdonlab/users/vsw/archive/intracranial-induction/freesurfer-output/mg43/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001301.label LabelWrite: saving to /autofs/cluster/purdonlab/users/vsw/archive/intracranial-induction/freesurfer-output/mg43/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001301.label Connecting and filling vertices in path at fillseed 160894 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Segmentation fault (core dumped) ERROR: mri_path2label --confillxfn rh.pial /autofs/cluster/purdonlab/users/vsw/archive/intracranial-induction/freesurfer-output/mg43/surf/tmp-mris_compute_lgi-rh.pial/mri_path2label.input failed!