Actually, making such a symlink could be dangerous. Red Hat/CentOS has several compatibility packages you can install for running old applications that need old shared libraries. For libstdc++.so.5 you need to find the rpm from the CentOS distribution for compat-libstdc++-33 and install it.

If you have 'yum' setup properly, you should as root just be able to run

yum install compat-libstdc++-33

On Mon, 29 Oct 2007, Pedro Paulo Oliveira Jr wrote:

Centos 5 uses libstdc++.so.6

You need to create a symbolic link using ln -s

From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Seth Elkin-Frankston Sent: segunda-feira, 29 de outubro de 2007 16:00 To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] freesurfer help

Hello,

I'm running v.4.0.1 on CentOS 5. When attempting to run autorecon1 I receive the error below. Any help is appreciated.

Thanks

Seth Elkin-Frankston

---

Iteration 1 Mon Oct 29 09:47:59 EDT 2007

nu_correct -clobber ./tmp.mri_nu_correct.mni.8422/nu0.mnc

./tmp.mri_nu_correct.mni.8422/nu1.mnc

[NeuroBio@lr8to10-dhcp-131-112.bumc.bu.edu:/usr/local/freesurfer/subjects/Bo

bFS/mri/] [2007-10-29 09:47:59] running:

/usr/local/freesurfer//mni/bin/nu_estimate_np_and_em -parzen -log -sharpen

0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify

-b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir

/usr/tmp/nu_correct_8477/ ./tmp.mri_nu_correct.mni.8422/nu0.mnc

./tmp.mri_nu_correct.mni.8422/nu1.imp

/usr/local/freesurfer//mni/bin/volume_stats: error while loading shared

libraries: libstdc++.so.5: cannot open shared object file: No such file or

directory

nu_estimate_np_and_em: crashed while running volume_stats (termination

status=32512)

nu_correct: crashed while running nu_estimate_np_and_em (termination

status=32512)

ERROR: nu_correct

Linux lr8to10-dhcp-131-112.bumc.bu.edu 2.6.18-8.1.15.el5 #1 SMP Mon Oct 22

08:32:04 EDT 2007 i686 i686 i386 GNU/Linux

recon-all exited with ERRORS at Mon Oct 29 09:47:59 EDT 2007

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