HI

I believe that recon-all -s <subjid> -qcache will pre-cache smoothing from 0 through 25 fwhm. You can howevere select a small subjection of this by issuing recon-all -s <subjid> -qcache -fwhm <desired smoothing>.

-measure <surfmeas> can follow -qcache, where <surfmeas> is one of: thickness, curv, sulc, area, jacobian_white or any surface measure. Multiple instances of -measure <meas> is supported.

Knut J

-s<subjid> -qcache

Knut J

<subjid> -qcache

On 06/20/2012 06:23 PM, mdkruepke@uwalumni.com wrote:

Freesurfers-

For pre-smoothing subject surfaces for qdec using:

recon-all -s<subjid> -qcache Is it necessary to have all the variations of smoothing done (ie - fwhm 0,5,10,15,20,25) or is it possible to run with only a subsection of these?

Best- Michael -- Michael D. Kruepke PhD - University of Illinois at Urbana-Champaign BA - Psych - University of Wisconsin-Madison mdkruepke@gmail.com mailto:mdkruepke@gmail.com (262)-483-7449

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