OK, that's good to know. Thanks! ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Thursday, January 28, 2016 1:32 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Slice order default

slice time correction is not used by default

On 01/28/2016 01:16 PM, Rodriguez-Thompson, Anais wrote:

Hi Freesurfer experts,

I just starting using slice time correction with a given slice order during pre-processing: preproc-sess -s GDDA001 -surface fsaverage lhrh -mni305 -so siemens -fwhm 5 -per-run

Previously I had been using the same command, but without the -so designation. Out of curiosity, without that flag was it running slice time correction by default? And if it was, what slice order was it using by default?

Thanks, Anais _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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