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After increasing the RAM capacity, recon-all is running smoothly, so I believe the issue was indeed due to insufficient memory. Thank you for your help.

At 2024-11-12 23:49:48, "Douglas N. Greve" dgreve@mgh.harvard.edu wrote:

Can you take a look at your images and the aseg.presurf.mgz segmentation and the rh.orig.nofix? The program that is throwing an error is trying to determine where the non-cortical medial wall is based on the aseg and the orig.nofix. If one or both of those are bad, then it may fail.

On 11/11/2024 8:47 AM, 王又劼 wrote:

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Hello FreeSurfer Developers,

Thank you to the development team for integrating deep learning-based image processing pipelines! I encountered the following error while running the recon-all -all command in FreeSurfer 8.0.0-beta:

mri_label2label --label-cortex /usr/local/freesurfer/8.0.0-beta/subjects/sub-JS_test/surf/rh.orig.nofix /usr/local/freesurfer/8.0.0-beta/subjects/sub-JS_test/mri/aseg.presurf.mgz 0 /usr/local/freesurfer/8.0.0-beta/subjects/sub-JS_test/label/rh.nofix.cortex.label double free or corruption (out) Abort (core dumped) ERROR: Command exited with non-zero status 1

This subject was successfully processed with FreeSurfer 7. I would like to know if this issue is related to insufficient memory or if it could be due to other reasons. Thank you again for your dedication and efforts.

(base) root@LXG:~# free total used free shared buff/cache available Mem: 32671564 688124 31172704 4728 810736 31547224 Swap: 8388608 118036 8270572

Best regards, Youjie Wang

1) FreeSurfer version: freesurfer_ubuntu22-8.0.0-beta_amd64.deb 2) Platform: Windows WSL2 3) uname -a: Linux LXG 5.15.153.1-microsoft-standard-WSL2 #1 SMP Fri Mar 29 23:14:13 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux 4) recon-all.log: see attached

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