can you send the full screen output also? On Mon, 22 Feb 2016, Corinna Bauer wrote:

Hi Bruce, I checked and it is indeed a volume file with 256x256x256 size.

The full command line was: mris_make_surfaces -cover_seg edited_ribbon.mgz subject_id lh

Thanks

Corinna

On Sat, Feb 20, 2016 at 1:38 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Corinna

  can you send us your full command line? Sounds like you are using a
  surface overlay as the cover_seg parameter instead of a volume one. Try
  running mri_info on it to make sure it is a volume (i.e. 256x256x256). If
  not, you will need to sample it into the volume with mri_surf2vol

  thanks
  Bruce

  On Thu, 18 Feb 2016, Corinna Bauer
  wrote:

  > Hello all,
  > I am attempting to reshape the pial surfaces to fill the new boundaries in
  > my edited ribbon.mgz file. I am using mris_make_surfaces with the -cover_seg
  > flag but keep getting this error:
  > ERROR: mris_make_surfaces-MRIcheckVolDims: volume1 height=256 != volume2
  > height=1.
  >
  > Any suggestions?
  >
  > Thanks!
  > Corinna
  >
  > FYI: I am trying to reshape the pial boundary based off this previous
  > thread.
  > https://mail.nmr.mgh.harvard.edu/pipermail///freesurfer/2014-November/04134
  > 8.html
  >
  >

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