External Email - Use Caution
Hi I tried to running recon all on a large amount of data and got the below error message. the listed files that say the tag image orientation can't be found aer in the folder but seem to be blank. i was wondering is there a way to run recon all and skip/ignore those seemingly blank files or should i delete them from the folder?
Thanks [image: error_message.png]
If they are not part of the T1w series, then you can delete them (but then they should not have caused the error). If they are part of the series, then they are probably corrupted or perhaps the output of a very aggressive anonymization.
On 11/25/2021 8:40 AM, Alison McDonnell wrote:
External Email - Use Caution
Hi I tried to running recon all on a large amount of data and got the below error message. the listed files that say the tag image orientation can't be found aer in the folder but seem to be blank. i was wondering is there a way to run recon all and skip/ignore those seemingly blank files or should i delete them from the folder?
Thanks error_message.png
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu