[Freesurfer] FREESURFER Recon all problem

Alison McDonnell

25 Nov 2021 25 Nov '21

8:40 a.m.

External Email - Use Caution

Hi I tried to running recon all on a large amount of data and got the below error message. the listed files that say the tag image orientation can't be found aer in the folder but seem to be blank. i was wondering is there a way to run recon all and skip/ignore those seemingly blank files or should i delete them from the folder?

Thanks [image: error_message.png]

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error_message.png (image/png — 40.2 KB)

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