Ciao Anastasia,

Here is the log file you requested. Thanks

Francesco Baldacchini

2013/12/17 Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu

Hi Francesco - Can you please send us your tracula log file, from scripts/trac-all.log? It's impossible to guess what went wrong without seeing the log file.

Thanks, a.y

On Tue, 17 Dec 2013, Francesco Baldacchini wrote:

Hi everybody,

...

I'm having problems running the trac-all -path command. It's giving me this error:

Segmentation fault (core dumped) Linux opbg 3.11.0-15-generic #23-Ubuntu SMP Mon Dec 9 18:17:04 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux

trac-paths exited with ERRORS at mar 17 dic 2013, 16.09.33, CET

I searched but it seems I'm the only one getting this error. To give you more information I can show you how the trac-all -bedp command ended, to me it seems without error:

59 slices processed 61 slices processed Queuing post processing stage /usr/local/freesurfer/bin/bedpostx_mgh: line 439: 5294 Terminated ${subjdir}.bedpostX/monitor

In attachment I loaded my drirc.tutorial configuration file. Thanks,

Francesco Baldacchini

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I commented out the mni_template command and all went good, Thank you so much for the help

2013/12/18 Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu

Ciao Francesco - The problem is that the pre-processing encountered an error, so parts of it didn't actually complete:

Image Exception : #22 :: ERROR: Could not open image /path/to/mni_template terminate called after throwing an instance of 'RBD_COMMON::BaseException'

You can comment out that line on your configuration file so that it'll find the default template. You don't need to repeat any pre-processing steps before the inter-subject registration (see wiki page for how to turn off steps). You also don't need to rerun bedpost.

Hope this helps, a.y

On Wed, 18 Dec 2013, Francesco Baldacchini wrote:

Ciao Anastasia,

...

Here is the log file you requested. Thanks

Francesco Baldacchini

2013/12/17 Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu

  Hi Francesco - Can you please send us your tracula log file,
  from scripts/trac-all.log? It's impossible to guess what went
  wrong without seeing the log file.

  Thanks,
  a.y

  On Tue, 17 Dec 2013, Francesco Baldacchini wrote:

        Hi everybody,

        I'm having problems running the trac-all -path
        command. It's giving me this
        error:

        Segmentation fault (core dumped)
        Linux opbg 3.11.0-15-generic #23-Ubuntu SMP Mon Dec
        9 18:17:04 UTC 2013
        x86_64 x86_64 x86_64 GNU/Linux

        trac-paths exited with ERRORS at mar 17 dic 2013,
        16.09.33, CET

        I searched but it seems I'm the only one getting
        this error. To give you
        more information I can show you how the trac-all
        -bedp command ended, to me
        it seems without error:

        59 slices processed
        61 slices processed
        Queuing post processing stage
        /usr/local/freesurfer/bin/bedpostx_mgh: line 439:
        5294
        Terminated
        ${subjdir}.bedpostX/monitor

        In attachment I loaded my drirc.tutorial
        configuration file. Thanks,

        Francesco Baldacchini

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.