Hello,
I was searching through the wiki and ran across a page that said to use csurf to make full surface cuts in order to ultimately create flattened surfaces. But while perusing the support archives, it was said that csurf is no longer supported. Is this true? How then do you make the full surface cuts needed to create the flattened surfaces?
Thanks
Adam
adam
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use tksurfer.
On Wed, 31 May 2006, adam walczak wrote:
Hello,
I was searching through the wiki and ran across a page that said to use csurf to make full surface cuts in order to ultimately create flattened surfaces. But while perusing the support archives, it was said that csurf is no longer supported. Is this true? How then do you make the full surface cuts needed to create the flattened surfaces?
Thanks
Adam
adam
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
about how long should the flattening process take?
mris_flatten took about nine hours when I tried it yesterday.
adam
--- Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
use tksurfer.
On Wed, 31 May 2006, adam walczak wrote:
Hello,
I was searching through the wiki and ran across a
page
that said to use csurf to make full surface cuts
in
order to ultimately create flattened surfaces.
But
while perusing the support archives, it was said
that
csurf is no longer supported. Is this true? How
then
do you make the full surface cuts needed to create
the
flattened surfaces?
Thanks
Adam
adam
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
adam
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that sounds about right depending on the size of the patch. Did it work?
On Wed, 31 May 2006, adam walczak wrote:
about how long should the flattening process take?
mris_flatten took about nine hours when I tried it yesterday.
adam
--- Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
use tksurfer.
On Wed, 31 May 2006, adam walczak wrote:
Hello,
I was searching through the wiki and ran across a
page
that said to use csurf to make full surface cuts
in
order to ultimately create flattened surfaces.
But
while perusing the support archives, it was said
that
csurf is no longer supported. Is this true? How
then
do you make the full surface cuts needed to create
the
flattened surfaces?
Thanks
Adam
adam
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
adam
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It did something, but I only made one cut and it produced something not looking correctly...it also crashes when I try to load the ROI that I want to overlay. That is the reason I am making the flattened image anyway.
adam
--- Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
that sounds about right depending on the size of the patch. Did it work?
On Wed, 31 May 2006, adam walczak wrote:
about how long should the flattening process take?
mris_flatten took about nine hours when I tried it yesterday.
adam
--- Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
use tksurfer.
On Wed, 31 May 2006, adam walczak wrote:
Hello,
I was searching through the wiki and ran across
a
page
that said to use csurf to make full surface cuts
in
order to ultimately create flattened surfaces.
But
while perusing the support archives, it was said
that
csurf is no longer supported. Is this true?
How
then
do you make the full surface cuts needed to
create
the
flattened surfaces?
Thanks
Adam
adam
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
adam
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protection around
adam
__________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com
there a few notes on flattening at the end of the recon-all help text. see the end of: https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all i don't know if it will help with your problem though.
On Wed, 2006-05-31 at 08:38 -0700, adam walczak wrote:
It did something, but I only made one cut and it produced something not looking correctly...it also crashes when I try to load the ROI that I want to overlay. That is the reason I am making the flattened image anyway.
adam
--- Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
that sounds about right depending on the size of the patch. Did it work?
On Wed, 31 May 2006, adam walczak wrote:
about how long should the flattening process take?
mris_flatten took about nine hours when I tried it yesterday.
adam
--- Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
use tksurfer.
On Wed, 31 May 2006, adam walczak wrote:
Hello,
I was searching through the wiki and ran across
a
page
that said to use csurf to make full surface cuts
in
order to ultimately create flattened surfaces.
But
while perusing the support archives, it was said
that
csurf is no longer supported. Is this true?
How
then
do you make the full surface cuts needed to
create
the
flattened surfaces?
Thanks
Adam
adam
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
adam
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
adam
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thanks...that pretty much answers my question.
--- Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:
there a few notes on flattening at the end of the recon-all help text. see the end of: https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all i don't know if it will help with your problem though.
On Wed, 2006-05-31 at 08:38 -0700, adam walczak wrote:
It did something, but I only made one cut and it produced something not looking correctly...it also crashes when I try to load the ROI that I want to overlay. That is the reason I am making the
flattened
image anyway.
adam
--- Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
that sounds about right depending on the size of
the
patch. Did it work?
On Wed, 31 May 2006, adam walczak wrote:
about how long should the flattening process
take?
mris_flatten took about nine hours when I
tried it
yesterday.
adam
--- Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
use tksurfer.
On Wed, 31 May 2006, adam walczak wrote:
Hello,
I was searching through the wiki and ran
across
a
page
that said to use csurf to make full surface
cuts
in
order to ultimately create flattened
surfaces.
But
while perusing the support archives, it was
said
that
csurf is no longer supported. Is this true?
How
then
do you make the full surface cuts needed to
create
the
flattened surfaces?
Thanks
Adam
adam
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best
spam
protection around
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
adam
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
adam
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
adam
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Can you load an overlay on top of a patch. The one that I tried to overlay (which works on the surfaces) crashed tksurfer...so is this possible?
Adam
--- Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:
there a few notes on flattening at the end of the recon-all help text. see the end of: https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all i don't know if it will help with your problem though.
On Wed, 2006-05-31 at 08:38 -0700, adam walczak wrote:
It did something, but I only made one cut and it produced something not looking correctly...it also crashes when I try to load the ROI that I want to overlay. That is the reason I am making the
flattened
image anyway.
adam
--- Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
that sounds about right depending on the size of
the
patch. Did it work?
On Wed, 31 May 2006, adam walczak wrote:
about how long should the flattening process
take?
mris_flatten took about nine hours when I
tried it
yesterday.
adam
--- Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
use tksurfer.
On Wed, 31 May 2006, adam walczak wrote:
Hello,
I was searching through the wiki and ran
across
a
page
that said to use csurf to make full surface
cuts
in
order to ultimately create flattened
surfaces.
But
while perusing the support archives, it was
said
that
csurf is no longer supported. Is this true?
How
then
do you make the full surface cuts needed to
create
the
flattened surfaces?
Thanks
Adam
adam
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best
spam
protection around
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
adam
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
adam
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
adam
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it's supposed to work, although we don't use patches all that much. You could load the patch in tksurfer, but loading the overlay crashed? What format is the overlay in?
On Wed, 31 May 2006, adam walczak wrote:
Can you load an overlay on top of a patch. The one that I tried to overlay (which works on the surfaces) crashed tksurfer...so is this possible?
Adam
--- Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:
there a few notes on flattening at the end of the recon-all help text. see the end of: https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all i don't know if it will help with your problem though.
On Wed, 2006-05-31 at 08:38 -0700, adam walczak wrote:
It did something, but I only made one cut and it produced something not looking correctly...it also crashes when I try to load the ROI that I want to overlay. That is the reason I am making the
flattened
image anyway.
adam
--- Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
that sounds about right depending on the size of
the
patch. Did it work?
On Wed, 31 May 2006, adam walczak wrote:
about how long should the flattening process
take?
mris_flatten took about nine hours when I
tried it
yesterday.
adam
--- Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
use tksurfer.
On Wed, 31 May 2006, adam walczak wrote:
> Hello, > > I was searching through the wiki and ran
across
a
page > that said to use csurf to make full surface
cuts
in > order to ultimately create flattened
surfaces.
But > while perusing the support archives, it was
said
that > csurf is no longer supported. Is this true?
How
then > do you make the full surface cuts needed to
create
the > flattened surfaces? > > Thanks > > Adam > > adam > >
> Do You Yahoo!? > Tired of spam? Yahoo! Mail has the best
spam
protection around > http://mail.yahoo.com >
> Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > >
adam
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
adam
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protection around
http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
adam
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It's a paint-format image *.w
--- Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
it's supposed to work, although we don't use patches all that much. You could load the patch in tksurfer, but loading the overlay crashed? What format is the overlay in?
On Wed, 31 May 2006, adam walczak wrote:
Can you load an overlay on top of a patch. The
one
that I tried to overlay (which works on the
surfaces)
crashed tksurfer...so is this possible?
Adam
--- Nick Schmansky nicks@nmr.mgh.harvard.edu
wrote:
there a few notes on flattening at the end of the recon-all help text. see the end of:
https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all
i don't know if it will help with your problem though.
On Wed, 2006-05-31 at 08:38 -0700, adam walczak wrote:
It did something, but I only made one cut and it produced something not looking correctly...it
also
crashes when I try to load the ROI that I want
to
overlay. That is the reason I am making the
flattened
image anyway.
adam
--- Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
that sounds about right depending on the size
of
the
patch. Did it work?
On Wed, 31 May 2006, adam walczak wrote:
about how long should the flattening process
take?
mris_flatten took about nine hours when I
tried it
yesterday.
adam
--- Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
> use tksurfer. > > On Wed, 31 May 2006, adam walczak wrote: > >> Hello, >> >> I was searching through the wiki and ran
across
a
> page >> that said to use csurf to make full surface
cuts
> in >> order to ultimately create flattened
surfaces.
> But >> while perusing the support archives, it was
said
> that >> csurf is no longer supported. Is this true?
How
> then >> do you make the full surface cuts needed to
create
> the >> flattened surfaces? >> >> Thanks >> >> Adam >> >> adam >> >>
>> Do You Yahoo!? >> Tired of spam? Yahoo! Mail has the best
spam
> protection around >> http://mail.yahoo.com >>
>> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>> >> >> >
adam
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protection around
adam
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adam
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protection around
adam
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freesurfer@nmr.mgh.harvard.edu
-
adam walczak -
Bruce Fischl -
Nick Schmansky