Hello,
I'm trying to reconstruct cortical surfaces from non-human primate MRIs. I tried following the instructions/scripts listed here ( https://surfer.nmr.mgh.harvard.edu/fswiki/MonkeyData), but I was unable to make it work (I'm also running FS 5.3). I noticed on the Washington-Pipelines github FAQ page listed a FreesurferNHP pipeline ( https://github.com/Washington-University/Pipelines/wiki/FAQ#9-what-if-i-want...), but it hasn't been released yet.
Do you know when this pipeline will be available? Alternatively, is there another way I can obtain the pipeline scripts and template volumes?
Thank you, Pete Lauro
Hi Peter,
On Jul 12, 2016, at 14:42 , Lauro, Peter peter_lauro@brown.edu wrote:
Hello,
I'm trying to reconstruct cortical surfaces from non-human primate MRIs. I tried following the instructions/scripts listed here (https://surfer.nmr.mgh.harvard.edu/fswiki/MonkeyData), but I was unable to make it work (I’m also running FS 5.3).
What went wrong?
Best Regards Sebastian
I noticed on the Washington-Pipelines github FAQ page listed a FreesurferNHP pipeline (https://github.com/Washington-University/Pipelines/wiki/FAQ#9-what-if-i-want...), but it hasn't been released yet.
Do you know when this pipeline will be available? Alternatively, is there another way I can obtain the pipeline scripts and template volumes?
Thank you, Pete Lauro
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
We haven¹t yet released our NHP pipeline yet, mainly because the software support requirements are a bit higher and so it has made more sense to work with people as a part of collaborations. This is more of a question for the HCP Users list or an off-list inquiry because the FreeSurfer group doesn¹t have anything to do with the FreeSurferNHP pipeline.
Peace,
Matt.
On 7/12/16, 9:17 AM, "Moeller, Sebastian" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of sebastian.moeller1@rwth-aachen.de> wrote:
Hi Peter,
On Jul 12, 2016, at 14:42 , Lauro, Peter peter_lauro@brown.edu wrote:
Hello,
I'm trying to reconstruct cortical surfaces from non-human primate MRIs. I tried following the instructions/scripts listed here (https://surfer.nmr.mgh.harvard.edu/fswiki/MonkeyData), but I was unable to make it work (I¹m also running FS 5.3).
What went wrong?
Best Regards Sebastian
I noticed on the Washington-Pipelines github FAQ page listed a FreesurferNHP pipeline (https://github.com/Washington-University/Pipelines/wiki/FAQ#9-what-if-i- want-to-process-non-human-primate-nhp-data-with-the-hcp-pipelines), but it hasn't been released yet.
Do you know when this pipeline will be available? Alternatively, is there another way I can obtain the pipeline scripts and template volumes?
Thank you, Pete Lauro
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Lauro, Peter -
Matt Glasser -
Moeller, Sebastian