Dear Freesurfers,
I am looking for a way to add a colorbar to my p-value tract cores generated through TRACULA.
When I load up the images as described in the tutorial here https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics
I only get a colorbar from 0 to 28.5 which cannot reflect pvalues, and there is no option to select my textfile with the p-values unfortunately.
Would you please help?
Thanks ever so,
Barbara
Hi Barbara - I don't believe that freeview has an option to show colorbars for heat maps that are loaded onto waypoints (if that's what you're trying to display). We should definitely add it in the future.
Best, a.y
On Wed, 6 Jul 2016, Barbara Kreilkamp wrote:
Dear Freesurfers,
I am looking for a way to add a colorbar to my p-value tract cores generated through TRACULA.
When I load up the images as described in the tutorial here https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics
I only get a colorbar from 0 to 28.5 which cannot reflect pvalues, and there is no option to select my textfile with the p-values unfortunately.
Would you please help?
Thanks ever so,
Barbara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dear Anastasia,
Thank you, yes that was exactly what I was attempting to do. Would you be able to assist me with this following question as well please?
How would I be able to use a different colormap under point sets please? I can only find "solid color" and "heatmap" but for example a blue-yellow-to-red colormap would suit my needs more.
Thank you,
Best wishes,
Barbara
On 07/07/2016 13:52, Anastasia Yendiki wrote:
Hi Barbara - I don't believe that freeview has an option to show colorbars for heat maps that are loaded onto waypoints (if that's what you're trying to display). We should definitely add it in the future.
Best, a.y
On Wed, 6 Jul 2016, Barbara Kreilkamp wrote:
Dear Freesurfers,
I am looking for a way to add a colorbar to my p-value tract cores generated through TRACULA.
When I load up the images as described in the tutorial here https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics
I only get a colorbar from 0 to 28.5 which cannot reflect pvalues, and there is no option to select my textfile with the p-values unfortunately.
Would you please help?
Thanks ever so,
Barbara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Barbara - Unfortunately we are very limited right now in our options for point set overlay display. I guess there's nothing that would be more suitable for displaying values that go all the way from negative to positive (which is what I suspect you have).
I'll submit this request to freeview headquarters :) Hopefully we can get it in there quickly. Thanks for your patience!
a.y
On Sun, 10 Jul 2016, Barbara Kreilkamp wrote:
Dear Anastasia,
Thank you, yes that was exactly what I was attempting to do. Would you be able to assist me with this following question as well please?
How would I be able to use a different colormap under point sets please? I can only find "solid color" and "heatmap" but for example a blue-yellow-to-red colormap would suit my needs more.
Thank you,
Best wishes,
Barbara
On 07/07/2016 13:52, Anastasia Yendiki wrote:
Hi Barbara - I don't believe that freeview has an option to show colorbars for heat maps that are loaded onto waypoints (if that's what you're trying to display). We should definitely add it in the future.
Best, a.y
On Wed, 6 Jul 2016, Barbara Kreilkamp wrote:
Dear Freesurfers,
I am looking for a way to add a colorbar to my p-value tract cores generated through TRACULA.
When I load up the images as described in the tutorial here https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics
I only get a colorbar from 0 to 28.5 which cannot reflect pvalues, and there is no option to select my textfile with the p-values unfortunately.
Would you please help?
Thanks ever so,
Barbara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
That's great, thank you Anastasia!
Best wishes,
Barbara
On 12/07/2016 22:52, Anastasia Yendiki wrote:
Hi Barbara - Unfortunately we are very limited right now in our options for point set overlay display. I guess there's nothing that would be more suitable for displaying values that go all the way from negative to positive (which is what I suspect you have).
I'll submit this request to freeview headquarters :) Hopefully we can get it in there quickly. Thanks for your patience!
a.y
On Sun, 10 Jul 2016, Barbara Kreilkamp wrote:
Dear Anastasia,
Thank you, yes that was exactly what I was attempting to do. Would you be able to assist me with this following question as well please?
How would I be able to use a different colormap under point sets please? I can only find "solid color" and "heatmap" but for example a blue-yellow-to-red colormap would suit my needs more.
Thank you,
Best wishes,
Barbara
On 07/07/2016 13:52, Anastasia Yendiki wrote:
Hi Barbara - I don't believe that freeview has an option to show colorbars for heat maps that are loaded onto waypoints (if that's what you're trying to display). We should definitely add it in the future.
Best, a.y
On Wed, 6 Jul 2016, Barbara Kreilkamp wrote:
Dear Freesurfers,
I am looking for a way to add a colorbar to my p-value tract cores generated through TRACULA.
When I load up the images as described in the tutorial here https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics
I only get a colorbar from 0 to 28.5 which cannot reflect pvalues, and there is no option to select my textfile with the p-values unfortunately.
Would you please help?
Thanks ever so,
Barbara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Anastasia Yendiki -
Barbara Kreilkamp