Thanks, I'll try with tkregister2 as I want to just check talairach and not use it elsewhere. Still thanks for the help and quickness,

Francesco Baldacchini

2014-04-01 14:18 GMT+02:00 Bruce Fischl fischl@nmr.mgh.harvard.edu:

Hi Francesco

look at mri_vol2vol -help and search for talairach. It has an explicit option for this (--tal). Or you can do it directly in tkregister2 if all you want to do is visualize the results of applying the transform (this is also in the mri_vol2vol help)

cheers Bruce

On Tue, 1 Apr 2014, Francesco Baldacchini wrote:

Hi everybody,

...

I'm in the process of studying all the Recon-all steps to find the step that is giving me problems in my study. Now I've just run the -talairach input and I would like to see if the talairach.xfm came out correctly by applying it to my ORIG.mgz, how can it do it? Which command do I have to use? I tried MRI_XFORM_TO_HEADER but it didn't work. Thanks everybody in advance and sorry if my question is too silly, but I'm a beginner.

Francesco Baldacchini

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