Hi All,

Was this issue solved?? I am getting the similar error but couldn't find a solution on the mailing list.

Fitting mesh to synthetic image from ASEG took 362.0884 seconds Transforming points Transforming points set final LTA type to 1 ltaReadFile(subject/mri/transforms/T1_to_T2.v10.lta): can't open file No such file or directory Segmentation fault (core dumped) freesurfer/bin//mri_concatenate_lta -out_type 1 subject/mri/transforms/T1_to_T2.v10.lta identity.nofile T1toT2.lta >/dev/null: Segmentation fault Error using fgets Invalid file identifier. Use fopen to generate a valid file identifier.

Regards,

Prabesh

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Eugenio Iglesias e.iglesias@bcbl.eu Sent: Monday, October 19, 2015 8:59:59 AM To: Freesurfer support list Subject: Re: [Freesurfer] -hippocampal-subfields-T1T2

Hi Daniel, sorry for the late reply; I was on vacation. It seems that the T1-T2 registration failed. Can you please send me the .log files for the hippocampal subfields? They should be in the following directory: media/orlandi/Ub4_Shared_HD/orlandi/PharmaCog-Volontari/CARTELLE-avg+base+long+T2/out_v5.3_35-MRIT1-VO-003-T01-avg.long.base_v5.3_35-MRIT1-VO-003/scripts/ Cheers, Eugenio

Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu

Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer

________________________________ From: "Daniele Orlandi" daniele.orlandi.psy@gmail.com To: "Freesurfer support list" freesurfer@nmr.mgh.harvard.edu Sent: Monday, October 12, 2015 6:58:34 PM Subject: [Freesurfer] -hippocampal-subfields-T1T2

Dear All, I'm trying to run the flag -hippocampal-subfields-T1T2 with the new FS v6.0 but I get the following error:

Fitting mesh to synthetic image from ASEG took 217.8633 seconds Transforming points Transforming points ltaReadFile(/media/orlandi/Ub4_Shared_HD/orlandi/PharmaCog-Volontari/CARTELLE-avg+base+long+T2/out_v5.3_35-MRIT1-VO-003-T01-avg.long.base_v5.3_35-MRIT1-VO-003/mri/transforms/T1_to_T1+T2.v10.lta): can't open file No such file or directory ERROR: Reading transform from file /media/orlandi/Ub4_Shared_HD/orlandi/PharmaCog-Volontari/CARTELLE-avg+base+long+T2/out_v5.3_35-MRIT1-VO-003-T01-avg.long.base_v5.3_35-MRIT1-VO-003/mri/transforms/T1_to_T1+T2.v10.lta

Do you have any suggestion? thank you all for your collaboration Daniele

_______________________________________________________________________________ Daniele Orlandi, PsyD, Research Assistant Laboratory of Epidemiology, Neuroimaging Alzheimer IRCCS Centro San Giovanni di Dio, Fatebenefratelli Via Pilastroni 4 25125 Brescia - Italy tel:+39 030/3501563tel:%2B39%20030%2F3501563 cell: +39 3495119685 tel:%2B39%20030%2F3501563 email: dorlandi@fatebenefratelli.itmailto:dorlandi@fatebenefratelli.it; daniele.orlandi.psy@gmail.commailto:daniele.orlandi.psy@gmail.com (http://www.centroalzheimer.org/sito/chi_staff_e.php)

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