-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1
What is this error:
endorphin.16> parcellate_subject ucsf_wa could not open translation file /home/dweber/freesurfer/home/Simple_surface_labels2002.txt mris_ca_label: could not read annotation file /home/dweber/freesurfer/home/Simple_surface_labels2002.txt...
No such file or directory
- --
Darren L. Weber, Ph.D. Postdoctoral Scholar
Dynamic Neuroimaging Laboratory, UCSF Department of Radiology, 185 Berry Street, Suite 350, Box 0946, San Francisco, CA 94107, USA.
Tel: +1 415 353-9444 Fax: +1 415 353-9421 www: http://dnl.ucsf.edu/users/dweber
"To explicate the uses of the brain seems as difficult a task as to paint the soul, of which it is commonly said, that it understands all things but itself." Thomas Willis (The Anatomy of the Brain and Nerves, 1664)
Hi Darren,
we are you still using parcellate)_subject? It's old, old old. What version are you running?
Bruce
On Mon, 24 Jul 2006, Darren Weber wrote:
--[PinePGP]--------------------------------------------------[begin]-- --[PinePGP]----------------------------------------------------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1
What is this error:
endorphin.16> parcellate_subject ucsf_wa could not open translation file /home/dweber/freesurfer/home/Simple_surface_labels2002.txt mris_ca_label: could not read annotation file /home/dweber/freesurfer/home/Simple_surface_labels2002.txt...
No such file or directory
Darren L. Weber, Ph.D. Postdoctoral Scholar
Dynamic Neuroimaging Laboratory, UCSF Department of Radiology, 185 Berry Street, Suite 350, Box 0946, San Francisco, CA 94107, USA.
Tel: +1 415 353-9444 Fax: +1 415 353-9421 www: http://dnl.ucsf.edu/users/dweber
"To explicate the uses of the brain seems as difficult a task as to paint the soul, of which it is commonly said, that it understands all things but itself." Thomas Willis (The Anatomy of the Brain and Nerves, 1664) -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.3 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org
iD8DBQFExVw6xaCYN7qs0v4RAkLUAJ9BNVQgy/oyu9I0BXu3oAdnce5kVACglRYJ F6VQxAqkmFwhRheo9pnztGc= =RANa -----END PGP SIGNATURE-----
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
PinePGP: Encryption backend encountered error. --[PinePGP]----------------------------------------------------[end]--
Darren,
The equivalent to parcellate_subject would be:
recon-all -s <subj> -cortparc -parcstats -cortparc2 -parcstats2
More info here, under autorecon3:
http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
Also, the surface labels are embedded in the parcellation atlas (so having Simple_surface_labels_200X.txt is no longer necessary), and output in the subjects stats dir as a .ctab file.
Nick
Hi Darren,
we are you still using parcellate)_subject? It's old, old old. What version are you running?
Bruce
On Mon, 24 Jul 2006, Darren Weber wrote:
--[PinePGP]--------------------------------------------------[begin]-- --[PinePGP]----------------------------------------------------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1
What is this error:
endorphin.16> parcellate_subject ucsf_wa could not open translation file /home/dweber/freesurfer/home/Simple_surface_labels2002.txt mris_ca_label: could not read annotation file /home/dweber/freesurfer/home/Simple_surface_labels2002.txt...
No such file or directory
Darren L. Weber, Ph.D. Postdoctoral Scholar
Dynamic Neuroimaging Laboratory, UCSF Department of Radiology, 185 Berry Street, Suite 350, Box 0946, San Francisco, CA 94107, USA.
Tel: +1 415 353-9444 Fax: +1 415 353-9421 www: http://dnl.ucsf.edu/users/dweber
"To explicate the uses of the brain seems as difficult a task as to paint the soul, of which it is commonly said, that it understands all things but itself." Thomas Willis (The Anatomy of the Brain and Nerves, 1664) -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.3 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org
iD8DBQFExVw6xaCYN7qs0v4RAkLUAJ9BNVQgy/oyu9I0BXu3oAdnce5kVACglRYJ F6VQxAqkmFwhRheo9pnztGc= =RANa -----END PGP SIGNATURE-----
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
PinePGP: Encryption backend encountered error. --[PinePGP]----------------------------------------------------[end]--
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Darren Weber -
Nick Schmansky