Darren,
The equivalent to parcellate_subject would be:
recon-all -s <subj> -cortparc -parcstats -cortparc2 -parcstats2
More info here, under autorecon3:
http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
Also, the surface labels are embedded in the parcellation atlas (so having Simple_surface_labels_200X.txt is no longer necessary), and output in the subjects stats dir as a .ctab file.
Nick
Hi Darren,
we are you still using parcellate)_subject? It's old, old old. What version are you running?
Bruce
On Mon, 24 Jul 2006, Darren Weber wrote:
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What is this error:
endorphin.16> parcellate_subject ucsf_wa could not open translation file /home/dweber/freesurfer/home/Simple_surface_labels2002.txt mris_ca_label: could not read annotation file /home/dweber/freesurfer/home/Simple_surface_labels2002.txt...
No such file or directory
Darren L. Weber, Ph.D. Postdoctoral Scholar
Dynamic Neuroimaging Laboratory, UCSF Department of Radiology, 185 Berry Street, Suite 350, Box 0946, San Francisco, CA 94107, USA.
Tel: +1 415 353-9444 Fax: +1 415 353-9421 www: http://dnl.ucsf.edu/users/dweber
"To explicate the uses of the brain seems as difficult a task as to paint the soul, of which it is commonly said, that it understands all things but itself." Thomas Willis (The Anatomy of the Brain and Nerves, 1664) -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.3 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org
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