Dear freesurfers,
After running recon-all -s Subject -autorecon1, I checked the status.log file, it seems to have two contradictory statements:
#@# *Talairach Failure Detection* Mon Jul 1 13:00:30 CDT 2013
recon-all -s Barba50527_2 finished *without error* at Mon Jul 1 13:23:15 CDT 2013
When I loaded talairach.xfm into brainmask.mgz, talairach.xfm seems to be fine. I had no idea what is going wrong, so I continued to run autorecon2.
Would someone please elucidate?
Thank you very much!
Sincerely, Ye
Hi Ye
I think that means that the failure detection was run, not that it found anything wrong.
cheers Bruce On Mon, 1 Jul 2013, ye tian wrote:
Dear freesurfers, After running recon-all -s Subject -autorecon1, I checked the status.log file, it seems to have two contradictory statements:
#@# Talairach Failure Detection Mon Jul 1 13:00:30 CDT 2013
recon-all -s Barba50527_2 finished without error at Mon Jul 1 13:23:15 CDT 2013
When I loaded talairach.xfm into brainmask.mgz, talairach.xfm seems to be fine. I had no idea what is going wrong, so I continued to run autorecon2.
Would someone please elucidate?
Thank you very much!
Sincerely, Ye
Dear Bruce,
Thank you very much! What a relief!
Sincerely, Ye
On Mon, Jul 1, 2013 at 5:25 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
Hi Ye
I think that means that the failure detection was run, not that it found anything wrong.
cheers Bruce
On Mon, 1 Jul 2013, ye tian wrote:
Dear freesurfers,
After running recon-all -s Subject -autorecon1, I checked the status.log file, it seems to have two contradictory statements:
#@# Talairach Failure Detection Mon Jul 1 13:00:30 CDT 2013
recon-all -s Barba50527_2 finished without error at Mon Jul 1 13:23:15 CDT 2013
When I loaded talairach.xfm into brainmask.mgz, talairach.xfm seems to be fine. I had no idea what is going wrong, so I continued to run autorecon2.
Would someone please elucidate?
Thank you very much!
Sincerely, Ye
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