They are different analyses. If you want to use the stats file, then you'll need to edit the parcellation/annotation to remove the offending areas. I think you can do this in FreeView, but someone else will have to guide you because I've never done it.
doug
On 10/14/2014 11:57 AM, Adam, Ruth wrote:
Hi,
Would that make a difference? I would like to use the stats file, unless you recommend otherwise. Thanks!
Best, ruthi
On 14 Oct 2014, at 17:43, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
Which cortical thickness measure? The value in the stats file or the values in the map prior to voxel-wise analysis?
On 10/10/2014 03:57 AM, Adam, Ruth wrote:
Hi,
I would like to exclude areas which were incorrectly segmented and could not be corrected after editing and re-running recon-all from the cortical thickness measure. Thank you again.
Best, ruthi
On 09 Oct 2014, at 19:57, Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
What analysis?
On 10/9/14 11:35 AM, Adam, Ruth wrote:
Hi all,
Would be great is someone can tell me how to exclude user-defined labels from the analysis.
As far as I understand after creating all labels, mris_label2annot with a custom colortable should be used. -Is this correct or is there a more efficient way to exclude labels form analysis? -How can the new annotation file be incorporated with old annotation files to mark what should be excluded/included in the analysis? -Can a similar operation be done directly for labels created in Tkmedit and volumes?
Thank you very much in advance!
Best, ruthi
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