Dear FreeSurfers,

In the training that I attended in May, I believe it was demonstrated by Allison that you could fix multiple problems at the same time. I understand how to make the edits at the same time, but am unsure what command to run to integrate all of these changes concurrently.

Since I currently do not know how to do this, it is taking me multiple days to fix some problems on subjects with multiple types of errors. Currently I first manually delete some dura on the brainmask.mgz (thus I would run recon-all -autorecon-pial -subjid xxxx). After examining the output the next day, I then add control points in the anterior temporal lobe or other places if needed on the same subject ( recon-all -autorecon2-cp -autorecon3 -subjid xxxx ).

I was wondering how to both manually delete the dura, and add cp at the same time for one processing event (thus saving me a lot of time)? Would the correct command line be:

recon-all -autorecon-pial autorecon2-cp -autorecon3 -subjid xxxx ?

Also, is it possible to edit the pial, add white matter, and control points all at the same time for one recon-all processing event? Would the correct command line be

recon-all -autorecon-pial autorecon2*-cp-wm* -autorecon3 -subjid xxxx

or

recon-all -autorecon-pial *autorecon2-cp* *autorecon2-wm* -autorecon3 -subjid xxxx

Thanks for your help :)

Sincerely, Mark Fletcher