In creating the base template for two of our subjects, the superior portion of the volume somehow got cut off (see attached). The original volumes for both time points are fine (i.e., do not display this problem), and completed the cross-sectional stream without problem. Is this an issue with aligning volumes from both time points, can it be fixed? Thanks.
CentOS 5.2 FS v4.5.0
-Derin
Bump
On Aug 27, 2010, at 12:25 PM, Derin Cobia wrote:
In creating the base template for two of our subjects, the superior portion of the volume somehow got cut off (see attached). The original volumes for both time points are fine (i.e., do not display this problem), and completed the cross-sectional stream without problem. Is this an issue with aligning volumes from both time points, can it be fixed? Thanks.
CentOS 5.2 FS v4.5.0
-Derin
Hi Derin,
thanks for bumping, slipped trough.
I have not seen this yet, not sure why it happens. Try to use the newer mri_robust_template from here: http://reuter.mit.edu/index.php/software/robust/ most likely it is fixed as we initialize the registration differently now. If the problem remains, I need the norm.mgz files of your two time points and of the base and the recon-all.log of the base for testing.
Best, Martin
On Wed, 2010-09-01 at 09:40 -0500, Derin Cobia wrote:
Bump
On Aug 27, 2010, at 12:25 PM, Derin Cobia wrote:
In creating the base template for two of our subjects, the superior portion of the volume somehow got cut off (see attached). The original volumes for both time points are fine (i.e., do not display this problem), and completed the cross-sectional stream without problem. Is this an issue with aligning volumes from both time points, can it be fixed? Thanks.
CentOS 5.2 FS v4.5.0
-Derin
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Derin Cobia -
Martin Reuter