Hi, In the attached Slice image of a processed brain, there is a yellow line which defines the WM and red line for the cortex but in segmentation some WM have been segmented as cortex and some part of cortex have not been segmented ! Would you please let me know how to handle the situation while I am reporting cortical thicknesses of my data?
Hi Amirhossein
as long as the surfaces are correct (yellow and red lines), then you don't need to worry about the segmentation, as it is the surfaces that define the thickness
cheers Bruce On Mon, 23 Sep 2013, amirhossein manzouri wrote:
Hi, In the attached Slice image of a processed brain, there is a yellow line which defines the WM and red line for the cortex but in segmentation some WM have been segmented as cortex and some part of cortex have not been segmented ! Would you please let me know how to handle the situation while I am reporting cortical thicknesses of my data?
-- Best regards, Amirhossein Manzouri
Thanks a lot!
On Mon, Sep 23, 2013 at 3:05 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
Hi Amirhossein
as long as the surfaces are correct (yellow and red lines), then you don't need to worry about the segmentation, as it is the surfaces that define the thickness
cheers Bruce
On Mon, 23 Sep 2013, amirhossein manzouri wrote:
Hi,
In the attached Slice image of a processed brain, there is a yellow line which defines the WM and red line for the cortex but in segmentation some WM have been segmented as cortex and some part of cortex have not been segmented ! Would you please let me know how to handle the situation while I am reporting cortical thicknesses of my data?
-- Best regards, Amirhossein Manzouri
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