Hi Jose,

mri_extract_label should do the trick if you give the output volume the .nii extension. THey will be in native space. Use aparc+aseg.mgz as input if you want cortical regions in the volume (although of course you lose resolution)

cheers, Bruce

On Thu, 28 May 2009, Jose Luis Cantero Lorente wrote:

Dear Freesurfers,

Is it possible to export to nii format specific regions previously

segmented with FS? If yes, how should I proceed with this task in the case of cortical and subcortical regions? Are they exported in the MNI space, Talairach,...?

Thanks in advance.

Best regards, Jose

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Jose Luis Cantero, Ph.D. Laboratory of Functional Neuroscience Department of Physiology, Anatomy, and Cellular Biology University Pablo de Olavide Ctra. de Utrera, Km.1 41013 - Sevilla

• Spain -

Phone: +34 954 977433 Fax: +34 954 349151 Email: jlcanlor@upo.es http://www.upo.es/neuroaging/es/

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